miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3724 5' -59.8 NC_001650.1 + 79071 0.71 0.471541
Target:  5'- -gGCCGAGGCgucgggccccGGgccuggcuccgggcGCGGCCGCUCGGCg -3'
miRNA:   3'- aaCGGUUUCG----------UC--------------UGCCGGUGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 162196 0.71 0.474312
Target:  5'- -gGCCAGGGCcgGGACGGgCACgCgGGCg -3'
miRNA:   3'- aaCGGUUUCG--UCUGCCgGUG-GgCCGa -5'
3724 5' -59.8 NC_001650.1 + 52575 0.71 0.474312
Target:  5'- -gGCgCGcAGGCAGGCGGCCGCCagcucgGGCc -3'
miRNA:   3'- aaCG-GU-UUCGUCUGCCGGUGGg-----CCGa -5'
3724 5' -59.8 NC_001650.1 + 22750 0.7 0.483606
Target:  5'- gUGCCAGAGCAGGCuggaGGgCACCauGCa -3'
miRNA:   3'- aACGGUUUCGUCUG----CCgGUGGgcCGa -5'
3724 5' -59.8 NC_001650.1 + 51163 0.7 0.483606
Target:  5'- gUGCCcgcGGGGCAGGCGGCgCGCgUGGUc -3'
miRNA:   3'- aACGG---UUUCGUCUGCCG-GUGgGCCGa -5'
3724 5' -59.8 NC_001650.1 + 130831 0.7 0.492987
Target:  5'- --uCCAgGAGgAGGCGGCCGCCCuGCUg -3'
miRNA:   3'- aacGGU-UUCgUCUGCCGGUGGGcCGA- -5'
3724 5' -59.8 NC_001650.1 + 45492 0.7 0.50245
Target:  5'- -gGCCAugcuGGCAGACaggGGCCAUgCUGGCa -3'
miRNA:   3'- aaCGGUu---UCGUCUG---CCGGUG-GGCCGa -5'
3724 5' -59.8 NC_001650.1 + 45454 0.7 0.50245
Target:  5'- -gGCCAugcuGGCAGACaggGGCCAUgCUGGCa -3'
miRNA:   3'- aaCGGUu---UCGUCUG---CCGGUG-GGCCGa -5'
3724 5' -59.8 NC_001650.1 + 45530 0.7 0.50245
Target:  5'- -gGCCAugcuGGCAGACaggGGCCAUgCUGGCa -3'
miRNA:   3'- aaCGGUu---UCGUCUG---CCGGUG-GGCCGa -5'
3724 5' -59.8 NC_001650.1 + 68877 0.7 0.509121
Target:  5'- -cGCCAGAcacauggugauccuGUAGACGGCCauGCgCGGCg -3'
miRNA:   3'- aaCGGUUU--------------CGUCUGCCGG--UGgGCCGa -5'
3724 5' -59.8 NC_001650.1 + 3375 0.7 0.521608
Target:  5'- -gGCCAcgugGGGCgGGGCGGCCAucuuaggaccCCCGGUa -3'
miRNA:   3'- aaCGGU----UUCG-UCUGCCGGU----------GGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 145748 0.7 0.521608
Target:  5'- -gGCCAuGGCGGGCaGGuCCGCCgGGUUc -3'
miRNA:   3'- aaCGGUuUCGUCUG-CC-GGUGGgCCGA- -5'
3724 5' -59.8 NC_001650.1 + 170082 0.7 0.521608
Target:  5'- -gGCCAcgugGGGCgGGGCGGCCAucuuaggaccCCCGGUa -3'
miRNA:   3'- aaCGGU----UUCG-UCUGCCGGU----------GGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 111918 0.69 0.550852
Target:  5'- -gGCC-AAGCAGAUGGCuUAUCUGGUg -3'
miRNA:   3'- aaCGGuUUCGUCUGCCG-GUGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 140514 0.69 0.550852
Target:  5'- -cGCCAucugguGGCAGACccuguGGCCGCCUcacuGGCa -3'
miRNA:   3'- aaCGGUu-----UCGUCUG-----CCGGUGGG----CCGa -5'
3724 5' -59.8 NC_001650.1 + 163519 0.69 0.550852
Target:  5'- cUGuUCAGGGUAGG-GGCgGCCCGGCa -3'
miRNA:   3'- aAC-GGUUUCGUCUgCCGgUGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 47543 0.69 0.550852
Target:  5'- -gGCCcacAGAGCGGgcgacuccgGCGGCuCGCCUGGCa -3'
miRNA:   3'- aaCGG---UUUCGUC---------UGCCG-GUGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 156568 0.69 0.559726
Target:  5'- -aGCCAGAGCuGAaGGCCaggccgacgcccaGCUCGGCg -3'
miRNA:   3'- aaCGGUUUCGuCUgCCGG-------------UGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 132430 0.69 0.560715
Target:  5'- -gGUCuucGGgAGGCaGGCCGCCUGGCUg -3'
miRNA:   3'- aaCGGuu-UCgUCUG-CCGGUGGGCCGA- -5'
3724 5' -59.8 NC_001650.1 + 69430 0.69 0.560715
Target:  5'- -gGUCAGgcucagggaguGGCAGAacaCGGCCcggGCCCGGCa -3'
miRNA:   3'- aaCGGUU-----------UCGUCU---GCCGG---UGGGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.