miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3724 5' -59.8 NC_001650.1 + 89190 1.04 0.002554
Target:  5'- gUUGCCAAAGCAGACGGCCACCCGGCUc -3'
miRNA:   3'- -AACGGUUUCGUCUGCCGGUGGGCCGA- -5'
3724 5' -59.8 NC_001650.1 + 3122 0.83 0.075028
Target:  5'- -gGCCccuggcaacagauGAcGCAGACGGCCACCCGGCUc -3'
miRNA:   3'- aaCGG-------------UUuCGUCUGCCGGUGGGCCGA- -5'
3724 5' -59.8 NC_001650.1 + 169829 0.83 0.075028
Target:  5'- -gGCCccuggcaacagauGAcGCAGACGGCCACCCGGCUc -3'
miRNA:   3'- aaCGG-------------UUuCGUCUGCCGGUGGGCCGA- -5'
3724 5' -59.8 NC_001650.1 + 77802 0.82 0.095201
Target:  5'- cUGCCGGAGCugcuGGACGGCCugCUGGCc -3'
miRNA:   3'- aACGGUUUCG----UCUGCCGGugGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 5258 0.77 0.190818
Target:  5'- aUGCCu-GGCAGGCGGCCaucuuggauccccauGCCUGGCa -3'
miRNA:   3'- aACGGuuUCGUCUGCCGG---------------UGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 171965 0.77 0.190818
Target:  5'- aUGCCu-GGCAGGCGGCCaucuuggauccccauGCCUGGCa -3'
miRNA:   3'- aACGGuuUCGUCUGCCGG---------------UGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 89213 0.75 0.270724
Target:  5'- -gGCCAGGGCGGGCGGCggcaaCugCUGGCc -3'
miRNA:   3'- aaCGGUUUCGUCUGCCG-----GugGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 66098 0.75 0.270724
Target:  5'- --cCCAAGGUGGGCGGgCACCUGGCg -3'
miRNA:   3'- aacGGUUUCGUCUGCCgGUGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 49889 0.74 0.317744
Target:  5'- -cGCCAucAGGCGGGCgaccuGGCCGCCCuGGCc -3'
miRNA:   3'- aaCGGU--UUCGUCUG-----CCGGUGGG-CCGa -5'
3724 5' -59.8 NC_001650.1 + 101810 0.73 0.347259
Target:  5'- cUGCCAGuuGGCGGGCuuGGCCAgCUCGGCc -3'
miRNA:   3'- aACGGUU--UCGUCUG--CCGGU-GGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 131608 0.73 0.354937
Target:  5'- -cGCCAGugggcGCAGcugcuGCuGGCCACCCGGCc -3'
miRNA:   3'- aaCGGUUu----CGUC-----UG-CCGGUGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 30861 0.73 0.354937
Target:  5'- --uUCGAGGaggaGGACGGCCGCCUGGCc -3'
miRNA:   3'- aacGGUUUCg---UCUGCCGGUGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 77401 0.73 0.362735
Target:  5'- -cGuCCAugGAGCGGGUGGCCGuCCCGGCg -3'
miRNA:   3'- aaC-GGU--UUCGUCUGCCGGU-GGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 125811 0.72 0.395094
Target:  5'- -cGCCAucGCGGAgGGCUAcgcgucCCCGGCc -3'
miRNA:   3'- aaCGGUuuCGUCUgCCGGU------GGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 46512 0.72 0.403471
Target:  5'- -cGUCGGGGCcGGCGGCgACCgGGCg -3'
miRNA:   3'- aaCGGUUUCGuCUGCCGgUGGgCCGa -5'
3724 5' -59.8 NC_001650.1 + 132836 0.72 0.420556
Target:  5'- -aGCgGGAGgAGccGCGGCCGCCgCGGCg -3'
miRNA:   3'- aaCGgUUUCgUC--UGCCGGUGG-GCCGa -5'
3724 5' -59.8 NC_001650.1 + 94039 0.71 0.429262
Target:  5'- cUGCCGGGGCucACGGUCACCgagUGGCUg -3'
miRNA:   3'- aACGGUUUCGucUGCCGGUGG---GCCGA- -5'
3724 5' -59.8 NC_001650.1 + 107123 0.71 0.455998
Target:  5'- aUGCaCAAGGUGGugGGCgaGCCCGcGCUc -3'
miRNA:   3'- aACG-GUUUCGUCugCCGg-UGGGC-CGA- -5'
3724 5' -59.8 NC_001650.1 + 36722 0.71 0.455998
Target:  5'- -cGCCAcGGC-GACgGGCCACUgGGCUu -3'
miRNA:   3'- aaCGGUuUCGuCUG-CCGGUGGgCCGA- -5'
3724 5' -59.8 NC_001650.1 + 59441 0.71 0.465108
Target:  5'- -cGuCCGcuGCAGACGGCCcCCCGcGCc -3'
miRNA:   3'- aaC-GGUuuCGUCUGCCGGuGGGC-CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.