miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3724 5' -59.8 NC_001650.1 + 3122 0.83 0.075028
Target:  5'- -gGCCccuggcaacagauGAcGCAGACGGCCACCCGGCUc -3'
miRNA:   3'- aaCGG-------------UUuCGUCUGCCGGUGGGCCGA- -5'
3724 5' -59.8 NC_001650.1 + 3303 0.67 0.700782
Target:  5'- -gGCCAcguggugagGAGCGG-CGGCCAUCUuaaacaGGCUa -3'
miRNA:   3'- aaCGGU---------UUCGUCuGCCGGUGGG------CCGA- -5'
3724 5' -59.8 NC_001650.1 + 3375 0.7 0.521608
Target:  5'- -gGCCAcgugGGGCgGGGCGGCCAucuuaggaccCCCGGUa -3'
miRNA:   3'- aaCGGU----UUCG-UCUGCCGGU----------GGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 4719 0.66 0.768065
Target:  5'- -aGCCAugGGGCuccGGA-GGCCcuccguGCCCGGCUc -3'
miRNA:   3'- aaCGGU--UUCG---UCUgCCGG------UGGGCCGA- -5'
3724 5' -59.8 NC_001650.1 + 5258 0.77 0.190818
Target:  5'- aUGCCu-GGCAGGCGGCCaucuuggauccccauGCCUGGCa -3'
miRNA:   3'- aACGGuuUCGUCUGCCGG---------------UGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 5333 0.66 0.768065
Target:  5'- -gGCCAcgugguGGGgAGGCGGCCaucuugucuguGCCgCGGCg -3'
miRNA:   3'- aaCGGU------UUCgUCUGCCGG-----------UGG-GCCGa -5'
3724 5' -59.8 NC_001650.1 + 7205 0.67 0.690877
Target:  5'- cUUGCaGAGGUAGAUGGCCACguaGGUg -3'
miRNA:   3'- -AACGgUUUCGUCUGCCGGUGgg-CCGa -5'
3724 5' -59.8 NC_001650.1 + 12239 0.68 0.630744
Target:  5'- aUGCC-AGGCauggggauccaAGAUGGCCGCCUgccaGGCa -3'
miRNA:   3'- aACGGuUUCG-----------UCUGCCGGUGGG----CCGa -5'
3724 5' -59.8 NC_001650.1 + 13638 0.66 0.758734
Target:  5'- cUGCUGAGGgGGACGcuGCCAgacCCUGGCc -3'
miRNA:   3'- aACGGUUUCgUCUGC--CGGU---GGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 14326 0.67 0.690877
Target:  5'- cUGCC-AGGCauggggauccaAGAUGGCCACC-GGCc -3'
miRNA:   3'- aACGGuUUCG-----------UCUGCCGGUGGgCCGa -5'
3724 5' -59.8 NC_001650.1 + 15053 0.66 0.755914
Target:  5'- aUGCCAGcgGGCcgcugggggggaagGGACGGCCccGCCC-GCUu -3'
miRNA:   3'- aACGGUU--UCG--------------UCUGCCGG--UGGGcCGA- -5'
3724 5' -59.8 NC_001650.1 + 15084 0.66 0.758734
Target:  5'- gUG-UGAGGUAGGCGGUUGCCgGGCa -3'
miRNA:   3'- aACgGUUUCGUCUGCCGGUGGgCCGa -5'
3724 5' -59.8 NC_001650.1 + 15552 0.66 0.739757
Target:  5'- gUUGCUcuguGGGcCGGuuguUGGCCGCUCGGCUg -3'
miRNA:   3'- -AACGGu---UUC-GUCu---GCCGGUGGGCCGA- -5'
3724 5' -59.8 NC_001650.1 + 16904 0.69 0.590566
Target:  5'- -gGCCcGGGggaGGGCGGCaGCCCGGCc -3'
miRNA:   3'- aaCGGuUUCg--UCUGCCGgUGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 19289 0.66 0.749295
Target:  5'- -aGCCGGGGUgagagacuGGCGGCgGCCgCGGUg -3'
miRNA:   3'- aaCGGUUUCGu-------CUGCCGgUGG-GCCGa -5'
3724 5' -59.8 NC_001650.1 + 19402 0.69 0.579581
Target:  5'- uUUGCCGcGGgGGucugcucGCGGCCGCCggCGGCUg -3'
miRNA:   3'- -AACGGUuUCgUC-------UGCCGGUGG--GCCGA- -5'
3724 5' -59.8 NC_001650.1 + 22477 0.67 0.710631
Target:  5'- -gGaCgGGAGCGcGGC-GCCGCCCGGCa -3'
miRNA:   3'- aaC-GgUUUCGU-CUGcCGGUGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 22750 0.7 0.483606
Target:  5'- gUGCCAGAGCAGGCuggaGGgCACCauGCa -3'
miRNA:   3'- aACGGUUUCGUCUG----CCgGUGGgcCGa -5'
3724 5' -59.8 NC_001650.1 + 26056 0.66 0.768065
Target:  5'- -gGCCuacAGCGG-CGGCCugaGCgCCGGCc -3'
miRNA:   3'- aaCGGuu-UCGUCuGCCGG---UG-GGCCGa -5'
3724 5' -59.8 NC_001650.1 + 27757 0.67 0.699794
Target:  5'- -gGCCAGGGUGGACacuucugcccccaGGCUcacGCCCGaGCUg -3'
miRNA:   3'- aaCGGUUUCGUCUG-------------CCGG---UGGGC-CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.