miRNA display CGI


Results 1 - 20 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3724 5' -59.8 NC_001650.1 + 163519 0.69 0.550852
Target:  5'- cUGuUCAGGGUAGG-GGCgGCCCGGCa -3'
miRNA:   3'- aAC-GGUUUCGUCUgCCGgUGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 79071 0.71 0.471541
Target:  5'- -gGCCGAGGCgucgggccccGGgccuggcuccgggcGCGGCCGCUCGGCg -3'
miRNA:   3'- aaCGGUUUCG----------UC--------------UGCCGGUGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 22750 0.7 0.483606
Target:  5'- gUGCCAGAGCAGGCuggaGGgCACCauGCa -3'
miRNA:   3'- aACGGUUUCGUCUG----CCgGUGGgcCGa -5'
3724 5' -59.8 NC_001650.1 + 51163 0.7 0.483606
Target:  5'- gUGCCcgcGGGGCAGGCGGCgCGCgUGGUc -3'
miRNA:   3'- aACGG---UUUCGUCUGCCG-GUGgGCCGa -5'
3724 5' -59.8 NC_001650.1 + 130831 0.7 0.492987
Target:  5'- --uCCAgGAGgAGGCGGCCGCCCuGCUg -3'
miRNA:   3'- aacGGU-UUCgUCUGCCGGUGGGcCGA- -5'
3724 5' -59.8 NC_001650.1 + 68877 0.7 0.509121
Target:  5'- -cGCCAGAcacauggugauccuGUAGACGGCCauGCgCGGCg -3'
miRNA:   3'- aaCGGUUU--------------CGUCUGCCGG--UGgGCCGa -5'
3724 5' -59.8 NC_001650.1 + 3375 0.7 0.521608
Target:  5'- -gGCCAcgugGGGCgGGGCGGCCAucuuaggaccCCCGGUa -3'
miRNA:   3'- aaCGGU----UUCG-UCUGCCGGU----------GGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 170082 0.7 0.521608
Target:  5'- -gGCCAcgugGGGCgGGGCGGCCAucuuaggaccCCCGGUa -3'
miRNA:   3'- aaCGGU----UUCG-UCUGCCGGU----------GGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 145748 0.7 0.521608
Target:  5'- -gGCCAuGGCGGGCaGGuCCGCCgGGUUc -3'
miRNA:   3'- aaCGGUuUCGUCUG-CC-GGUGGgCCGA- -5'
3724 5' -59.8 NC_001650.1 + 94039 0.71 0.429262
Target:  5'- cUGCCGGGGCucACGGUCACCgagUGGCUg -3'
miRNA:   3'- aACGGUUUCGucUGCCGGUGG---GCCGA- -5'
3724 5' -59.8 NC_001650.1 + 132836 0.72 0.420556
Target:  5'- -aGCgGGAGgAGccGCGGCCGCCgCGGCg -3'
miRNA:   3'- aaCGgUUUCgUC--UGCCGGUGG-GCCGa -5'
3724 5' -59.8 NC_001650.1 + 46512 0.72 0.403471
Target:  5'- -cGUCGGGGCcGGCGGCgACCgGGCg -3'
miRNA:   3'- aaCGGUUUCGuCUGCCGgUGGgCCGa -5'
3724 5' -59.8 NC_001650.1 + 169829 0.83 0.075028
Target:  5'- -gGCCccuggcaacagauGAcGCAGACGGCCACCCGGCUc -3'
miRNA:   3'- aaCGG-------------UUuCGUCUGCCGGUGGGCCGA- -5'
3724 5' -59.8 NC_001650.1 + 77802 0.82 0.095201
Target:  5'- cUGCCGGAGCugcuGGACGGCCugCUGGCc -3'
miRNA:   3'- aACGGUUUCG----UCUGCCGGugGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 5258 0.77 0.190818
Target:  5'- aUGCCu-GGCAGGCGGCCaucuuggauccccauGCCUGGCa -3'
miRNA:   3'- aACGGuuUCGUCUGCCGG---------------UGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 171965 0.77 0.190818
Target:  5'- aUGCCu-GGCAGGCGGCCaucuuggauccccauGCCUGGCa -3'
miRNA:   3'- aACGGuuUCGUCUGCCGG---------------UGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 89213 0.75 0.270724
Target:  5'- -gGCCAGGGCGGGCGGCggcaaCugCUGGCc -3'
miRNA:   3'- aaCGGUUUCGUCUGCCG-----GugGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 49889 0.74 0.317744
Target:  5'- -cGCCAucAGGCGGGCgaccuGGCCGCCCuGGCc -3'
miRNA:   3'- aaCGGU--UUCGUCUG-----CCGGUGGG-CCGa -5'
3724 5' -59.8 NC_001650.1 + 30861 0.73 0.354937
Target:  5'- --uUCGAGGaggaGGACGGCCGCCUGGCc -3'
miRNA:   3'- aacGGUUUCg---UCUGCCGGUGGGCCGa -5'
3724 5' -59.8 NC_001650.1 + 131608 0.73 0.354937
Target:  5'- -cGCCAGugggcGCAGcugcuGCuGGCCACCCGGCc -3'
miRNA:   3'- aaCGGUUu----CGUC-----UG-CCGGUGGGCCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.