miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3731 5' -51.1 NC_001650.1 + 82575 1.14 0.00576
Target:  5'- cUGAUGAUCCCCUCCCCGUUAAAGUCCa -3'
miRNA:   3'- -ACUACUAGGGGAGGGGCAAUUUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 88675 0.74 0.814685
Target:  5'- aGGUGAUCUauaUCUCCuCCGgu-GAGUCCg -3'
miRNA:   3'- aCUACUAGG---GGAGG-GGCaauUUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 98038 0.73 0.856488
Target:  5'- ------cCCCCUCCCCGUccGAGUCa -3'
miRNA:   3'- acuacuaGGGGAGGGGCAauUUCAGg -5'
3731 5' -51.1 NC_001650.1 + 92167 0.72 0.912263
Target:  5'- ---aGGUCaCCUCCCCGUUGAAGa-- -3'
miRNA:   3'- acuaCUAGgGGAGGGGCAAUUUCagg -5'
3731 5' -51.1 NC_001650.1 + 5201 0.71 0.923831
Target:  5'- gGGUGGUCCCUUCUCUcuuGUacaugGGGGUCCc -3'
miRNA:   3'- aCUACUAGGGGAGGGG---CAa----UUUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 171908 0.71 0.923831
Target:  5'- gGGUGGUCCCUUCUCUcuuGUacaugGGGGUCCc -3'
miRNA:   3'- aCUACUAGGGGAGGGG---CAa----UUUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 141290 0.7 0.950161
Target:  5'- cUGGUGAUCCCCuauccuagucgcgcgUCCCCuUUGGacgguGGUCUu -3'
miRNA:   3'- -ACUACUAGGGG---------------AGGGGcAAUU-----UCAGG- -5'
3731 5' -51.1 NC_001650.1 + 150066 0.7 0.956612
Target:  5'- ---aGGUCCuuCCUCagCCCGUUGAGGUUCu -3'
miRNA:   3'- acuaCUAGG--GGAG--GGGCAAUUUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 18779 0.7 0.960341
Target:  5'- -----cUCCCCUCCCCGggcAGGGUUa -3'
miRNA:   3'- acuacuAGGGGAGGGGCaa-UUUCAGg -5'
3731 5' -51.1 NC_001650.1 + 61402 0.7 0.963843
Target:  5'- gUGGUG-UCCCuCUCCUCGgaGAAcUCCa -3'
miRNA:   3'- -ACUACuAGGG-GAGGGGCaaUUUcAGG- -5'
3731 5' -51.1 NC_001650.1 + 162405 0.7 0.963843
Target:  5'- gGGUGGUcgccucCCCCUCCCCGg---GG-CCu -3'
miRNA:   3'- aCUACUA------GGGGAGGGGCaauuUCaGG- -5'
3731 5' -51.1 NC_001650.1 + 7123 0.69 0.967123
Target:  5'- cUGGUGGUCCauCCUCCCgGg---GGUCUc -3'
miRNA:   3'- -ACUACUAGG--GGAGGGgCaauuUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 173830 0.69 0.967123
Target:  5'- cUGGUGGUCCauCCUCCCgGg---GGUCUc -3'
miRNA:   3'- -ACUACUAGG--GGAGGGgCaauuUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 119570 0.69 0.970186
Target:  5'- aUGGUGGUCaaaaaCCUgaacgUCCCGUU--GGUCCa -3'
miRNA:   3'- -ACUACUAGg----GGA-----GGGGCAAuuUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 159809 0.69 0.97304
Target:  5'- ---aGggCCCCUCCCCGUaAgcGUgCCu -3'
miRNA:   3'- acuaCuaGGGGAGGGGCAaUuuCA-GG- -5'
3731 5' -51.1 NC_001650.1 + 66568 0.69 0.975691
Target:  5'- aGGUGGUCCCCguagaggaCCUC---AAAGUCCu -3'
miRNA:   3'- aCUACUAGGGGa-------GGGGcaaUUUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 135832 0.69 0.975691
Target:  5'- aGAUGGcCCUCUUCCUGUUuAGGUUg -3'
miRNA:   3'- aCUACUaGGGGAGGGGCAAuUUCAGg -5'
3731 5' -51.1 NC_001650.1 + 155408 0.69 0.975691
Target:  5'- cGGUGAggCCCCUCCCCaccuc--UCCu -3'
miRNA:   3'- aCUACUa-GGGGAGGGGcaauuucAGG- -5'
3731 5' -51.1 NC_001650.1 + 99919 0.69 0.975691
Target:  5'- gGGUcccCCCCUCCCCGgcccGGGUCa -3'
miRNA:   3'- aCUAcuaGGGGAGGGGCaau-UUCAGg -5'
3731 5' -51.1 NC_001650.1 + 80650 0.69 0.975691
Target:  5'- gGGUGcGUCCCCUgCCaCGggagGAAGaUCCa -3'
miRNA:   3'- aCUAC-UAGGGGAgGG-GCaa--UUUC-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.