miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3731 5' -51.1 NC_001650.1 + 61116 0.65 0.997367
Target:  5'- gUGAUGAggagcUCgCCUCCCCcgccgcccccGGGUCCc -3'
miRNA:   3'- -ACUACU-----AGgGGAGGGGcaau------UUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 24988 0.67 0.992772
Target:  5'- cGG-GGcCCCCUCCCCG---GAGUgCCu -3'
miRNA:   3'- aCUaCUaGGGGAGGGGCaauUUCA-GG- -5'
3731 5' -51.1 NC_001650.1 + 160635 0.67 0.992772
Target:  5'- gGAUaGAgagCCCa-CCCCGUUGGAGaaggcUCCa -3'
miRNA:   3'- aCUA-CUa--GGGgaGGGGCAAUUUC-----AGG- -5'
3731 5' -51.1 NC_001650.1 + 167426 0.67 0.992772
Target:  5'- aGAggaGUCCCCUCCCaGUUAuugggaaauguuGAGcCCa -3'
miRNA:   3'- aCUac-UAGGGGAGGGgCAAU------------UUCaGG- -5'
3731 5' -51.1 NC_001650.1 + 145836 0.67 0.993723
Target:  5'- cUGAgcUGGUCcacgCCCUgcCCCCGguaaucugucUUGGAGUCCa -3'
miRNA:   3'- -ACU--ACUAG----GGGA--GGGGC----------AAUUUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 67159 0.67 0.993723
Target:  5'- cGGUGAUCUCCcCgCCCGc----GUCCg -3'
miRNA:   3'- aCUACUAGGGGaG-GGGCaauuuCAGG- -5'
3731 5' -51.1 NC_001650.1 + 46286 0.66 0.995991
Target:  5'- aGGUGAaCUCCUcgcgaccucCCCCGUUgcggccGAAGUCa -3'
miRNA:   3'- aCUACUaGGGGA---------GGGGCAA------UUUCAGg -5'
3731 5' -51.1 NC_001650.1 + 138816 0.66 0.996577
Target:  5'- --uUGGUcCCCCUCUCgGUUGcgcGGGUCa -3'
miRNA:   3'- acuACUA-GGGGAGGGgCAAU---UUCAGg -5'
3731 5' -51.1 NC_001650.1 + 145414 0.66 0.996577
Target:  5'- gGGUGGUagCCCUCCagCGc-AAAGUCCu -3'
miRNA:   3'- aCUACUAg-GGGAGGg-GCaaUUUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 719 0.67 0.992772
Target:  5'- aGAggaGUCCCCUCCCaGUUAuugggaaauguuGAGcCCa -3'
miRNA:   3'- aCUac-UAGGGGAGGGgCAAU------------UUCaGG- -5'
3731 5' -51.1 NC_001650.1 + 31063 0.67 0.990524
Target:  5'- -------aCCCUCCCCGcucGAGUCCc -3'
miRNA:   3'- acuacuagGGGAGGGGCaauUUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 73529 0.67 0.989212
Target:  5'- aGGUGAUCCUgacCCCCGUgacggcgGAcguGUCCu -3'
miRNA:   3'- aCUACUAGGGga-GGGGCAa------UUu--CAGG- -5'
3731 5' -51.1 NC_001650.1 + 92167 0.72 0.912263
Target:  5'- ---aGGUCaCCUCCCCGUUGAAGa-- -3'
miRNA:   3'- acuaCUAGgGGAGGGGCAAUUUCagg -5'
3731 5' -51.1 NC_001650.1 + 66568 0.69 0.975691
Target:  5'- aGGUGGUCCCCguagaggaCCUC---AAAGUCCu -3'
miRNA:   3'- aCUACUAGGGGa-------GGGGcaaUUUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 80650 0.69 0.975691
Target:  5'- gGGUGcGUCCCCUgCCaCGggagGAAGaUCCa -3'
miRNA:   3'- aCUAC-UAGGGGAgGG-GCaa--UUUC-AGG- -5'
3731 5' -51.1 NC_001650.1 + 99919 0.69 0.975691
Target:  5'- gGGUcccCCCCUCCCCGgcccGGGUCa -3'
miRNA:   3'- aCUAcuaGGGGAGGGGCaau-UUCAGg -5'
3731 5' -51.1 NC_001650.1 + 155408 0.69 0.975691
Target:  5'- cGGUGAggCCCCUCCCCaccuc--UCCu -3'
miRNA:   3'- aCUACUa-GGGGAGGGGcaauuucAGG- -5'
3731 5' -51.1 NC_001650.1 + 71071 0.68 0.982499
Target:  5'- gGAUGGccaUCCCCUCCUCGgucaucAGGGUg- -3'
miRNA:   3'- aCUACU---AGGGGAGGGGCaa----UUUCAgg -5'
3731 5' -51.1 NC_001650.1 + 111503 0.68 0.986165
Target:  5'- cUGGUGAUCCCCgCCgCCGcgcgcacgggGGAGgCCa -3'
miRNA:   3'- -ACUACUAGGGGaGG-GGCaa--------UUUCaGG- -5'
3731 5' -51.1 NC_001650.1 + 71882 0.67 0.989212
Target:  5'- gUGAUGAacgCCCagcucaucgCCCUGgugaUAGAGUCCu -3'
miRNA:   3'- -ACUACUa--GGGga-------GGGGCa---AUUUCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.