miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3731 5' -51.1 NC_001650.1 + 719 0.67 0.992772
Target:  5'- aGAggaGUCCCCUCCCaGUUAuugggaaauguuGAGcCCa -3'
miRNA:   3'- aCUac-UAGGGGAGGGgCAAU------------UUCaGG- -5'
3731 5' -51.1 NC_001650.1 + 5201 0.71 0.923831
Target:  5'- gGGUGGUCCCUUCUCUcuuGUacaugGGGGUCCc -3'
miRNA:   3'- aCUACUAGGGGAGGGG---CAa----UUUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 7123 0.69 0.967123
Target:  5'- cUGGUGGUCCauCCUCCCgGg---GGUCUc -3'
miRNA:   3'- -ACUACUAGG--GGAGGGgCaauuUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 18779 0.7 0.960341
Target:  5'- -----cUCCCCUCCCCGggcAGGGUUa -3'
miRNA:   3'- acuacuAGGGGAGGGGCaa-UUUCAGg -5'
3731 5' -51.1 NC_001650.1 + 24988 0.67 0.992772
Target:  5'- cGG-GGcCCCCUCCCCG---GAGUgCCu -3'
miRNA:   3'- aCUaCUaGGGGAGGGGCaauUUCA-GG- -5'
3731 5' -51.1 NC_001650.1 + 27876 0.67 0.994075
Target:  5'- aGAUGAcugggcugaggcacCCCCUgccCCCCGUcGAGGcCCa -3'
miRNA:   3'- aCUACUa-------------GGGGA---GGGGCAaUUUCaGG- -5'
3731 5' -51.1 NC_001650.1 + 31063 0.67 0.990524
Target:  5'- -------aCCCUCCCCGcucGAGUCCc -3'
miRNA:   3'- acuacuagGGGAGGGGCaauUUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 37512 0.67 0.990524
Target:  5'- aGGUGAacUCCCCgcgaccUCuCCCGUUgcugccGAAGUCa -3'
miRNA:   3'- aCUACU--AGGGG------AG-GGGCAA------UUUCAGg -5'
3731 5' -51.1 NC_001650.1 + 40366 0.68 0.986165
Target:  5'- gGGUG-UCCaUCUCCCUcagGAAGUCCu -3'
miRNA:   3'- aCUACuAGG-GGAGGGGcaaUUUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 46286 0.66 0.995991
Target:  5'- aGGUGAaCUCCUcgcgaccucCCCCGUUgcggccGAAGUCa -3'
miRNA:   3'- aCUACUaGGGGA---------GGGGCAA------UUUCAGg -5'
3731 5' -51.1 NC_001650.1 + 55818 0.68 0.980413
Target:  5'- aGGUGGUgUCCaugugCCCCGcggccagGGAGUCCg -3'
miRNA:   3'- aCUACUAgGGGa----GGGGCaa-----UUUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 56150 0.68 0.987762
Target:  5'- ---gGAUCCCCgcguagCCCCuc--GGGUCCg -3'
miRNA:   3'- acuaCUAGGGGa-----GGGGcaauUUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 56732 0.67 0.991708
Target:  5'- cGgcGccCCCCUCCCCGgccccAucGUCCc -3'
miRNA:   3'- aCuaCuaGGGGAGGGGCaa---UuuCAGG- -5'
3731 5' -51.1 NC_001650.1 + 61116 0.65 0.997367
Target:  5'- gUGAUGAggagcUCgCCUCCCCcgccgcccccGGGUCCc -3'
miRNA:   3'- -ACUACU-----AGgGGAGGGGcaau------UUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 61402 0.7 0.963843
Target:  5'- gUGGUG-UCCCuCUCCUCGgaGAAcUCCa -3'
miRNA:   3'- -ACUACuAGGG-GAGGGGCaaUUUcAGG- -5'
3731 5' -51.1 NC_001650.1 + 65773 0.68 0.987762
Target:  5'- cGGUGuucagggaCCUCUCCCCGcUGcugugcagcAAGUCCg -3'
miRNA:   3'- aCUACua------GGGGAGGGGCaAU---------UUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 66568 0.69 0.975691
Target:  5'- aGGUGGUCCCCguagaggaCCUC---AAAGUCCu -3'
miRNA:   3'- aCUACUAGGGGa-------GGGGcaaUUUCAGG- -5'
3731 5' -51.1 NC_001650.1 + 67159 0.67 0.993723
Target:  5'- cGGUGAUCUCCcCgCCCGc----GUCCg -3'
miRNA:   3'- aCUACUAGGGGaG-GGGCaauuuCAGG- -5'
3731 5' -51.1 NC_001650.1 + 70537 0.69 0.976696
Target:  5'- cGGUGAUCCCCUCCuucauaggcauggagCUGUgcguGGUggCCg -3'
miRNA:   3'- aCUACUAGGGGAGG---------------GGCAauu-UCA--GG- -5'
3731 5' -51.1 NC_001650.1 + 71071 0.68 0.982499
Target:  5'- gGAUGGccaUCCCCUCCUCGgucaucAGGGUg- -3'
miRNA:   3'- aCUACU---AGGGGAGGGGCaa----UUUCAgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.