miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3804 3' -56.8 NC_001650.1 + 50587 0.66 0.928825
Target:  5'- gGCCGCCcccaccGUGGUCAgGUgCUCCCu- -3'
miRNA:   3'- -UGGCGGuau---CAUCAGUgCA-GGGGGcg -5'
3804 3' -56.8 NC_001650.1 + 155796 0.66 0.927798
Target:  5'- cGCCGCCcgGGggaccuguagagGGUCA-GcUCCCCGCc -3'
miRNA:   3'- -UGGCGGuaUCa-----------UCAGUgCaGGGGGCG- -5'
3804 3' -56.8 NC_001650.1 + 7288 0.66 0.927282
Target:  5'- gGCCGCCGggauaguuacccaaUGGcucauacaUAGUCAUcaugGUCCCCCa- -3'
miRNA:   3'- -UGGCGGU--------------AUC--------AUCAGUG----CAGGGGGcg -5'
3804 3' -56.8 NC_001650.1 + 173995 0.66 0.927282
Target:  5'- gGCCGCCGggauaguuacccaaUGGcucauacaUAGUCAUcaugGUCCCCCa- -3'
miRNA:   3'- -UGGCGGU--------------AUC--------AUCAGUG----CAGGGGGcg -5'
3804 3' -56.8 NC_001650.1 + 80644 0.66 0.923601
Target:  5'- gACCGCg--GGU----GCGUCCCCUGCc -3'
miRNA:   3'- -UGGCGguaUCAucagUGCAGGGGGCG- -5'
3804 3' -56.8 NC_001650.1 + 19377 0.66 0.923601
Target:  5'- cGCC-CCAUAGcUGGUCucugggACGUUUgCCGCg -3'
miRNA:   3'- -UGGcGGUAUC-AUCAG------UGCAGGgGGCG- -5'
3804 3' -56.8 NC_001650.1 + 115627 0.66 0.923601
Target:  5'- cACCaaCAUGGUcaucaacaccaAGaUCGCGUgcgaCCCCCGCg -3'
miRNA:   3'- -UGGcgGUAUCA-----------UC-AGUGCA----GGGGGCG- -5'
3804 3' -56.8 NC_001650.1 + 109535 0.66 0.923601
Target:  5'- aACCuCaCGUGGUccauGuUCACGUCCCCCa- -3'
miRNA:   3'- -UGGcG-GUAUCAu---C-AGUGCAGGGGGcg -5'
3804 3' -56.8 NC_001650.1 + 111627 0.66 0.918148
Target:  5'- uCCaCCGUGGgcGcCACGUCCgaggCCUGCa -3'
miRNA:   3'- uGGcGGUAUCauCaGUGCAGG----GGGCG- -5'
3804 3' -56.8 NC_001650.1 + 61138 0.66 0.918148
Target:  5'- cGCCGCCcc------CGgGUCCCCCGCc -3'
miRNA:   3'- -UGGCGGuaucaucaGUgCAGGGGGCG- -5'
3804 3' -56.8 NC_001650.1 + 115364 0.66 0.912469
Target:  5'- gGCgGCCAUGGgcccGGgcgcgcggCACGUCccguccgaggcgCCCCGCc -3'
miRNA:   3'- -UGgCGGUAUCa---UCa-------GUGCAG------------GGGGCG- -5'
3804 3' -56.8 NC_001650.1 + 69415 0.66 0.906563
Target:  5'- gGCCGCCcUGGgcGUgugCAgGaUCCCCGCc -3'
miRNA:   3'- -UGGCGGuAUCauCA---GUgCaGGGGGCG- -5'
3804 3' -56.8 NC_001650.1 + 48120 0.66 0.900433
Target:  5'- gAUgGCCAggg-GGUcCAUGaCCCCCGCg -3'
miRNA:   3'- -UGgCGGUaucaUCA-GUGCaGGGGGCG- -5'
3804 3' -56.8 NC_001650.1 + 57466 0.66 0.900433
Target:  5'- uAUCuCaCGUAGUAGccCugGUCCCCgGCg -3'
miRNA:   3'- -UGGcG-GUAUCAUCa-GugCAGGGGgCG- -5'
3804 3' -56.8 NC_001650.1 + 113121 0.66 0.900433
Target:  5'- cACCGCgAU---GGUCuuGUCCCCCa- -3'
miRNA:   3'- -UGGCGgUAucaUCAGugCAGGGGGcg -5'
3804 3' -56.8 NC_001650.1 + 133289 0.66 0.898551
Target:  5'- aACCGCguUcacggggcaGGUgacccccugGGUCACGUgcaccuugcagaagCCCCCGCg -3'
miRNA:   3'- -UGGCGguA---------UCA---------UCAGUGCA--------------GGGGGCG- -5'
3804 3' -56.8 NC_001650.1 + 90017 0.67 0.894082
Target:  5'- cGCCGCCGgucGGccggAGcgCGCG-CCCCCGa -3'
miRNA:   3'- -UGGCGGUa--UCa---UCa-GUGCaGGGGGCg -5'
3804 3' -56.8 NC_001650.1 + 148342 0.67 0.887513
Target:  5'- cCCGCCccgcGUGaaacucCAgGUCCCCCGCg -3'
miRNA:   3'- uGGCGGuau-CAUca----GUgCAGGGGGCG- -5'
3804 3' -56.8 NC_001650.1 + 126398 0.67 0.887513
Target:  5'- cACCGCCcggAGcgaugcccuUCGCG-CCCCCGCc -3'
miRNA:   3'- -UGGCGGua-UCauc------AGUGCaGGGGGCG- -5'
3804 3' -56.8 NC_001650.1 + 106961 0.67 0.880728
Target:  5'- aGCCuGCaggaGUcGGUGGUCuCGUgCCCCUGCu -3'
miRNA:   3'- -UGG-CGg---UA-UCAUCAGuGCA-GGGGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.