miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3804 5' -57.7 NC_001650.1 + 76104 0.7 0.702641
Target:  5'- cCCGcGAGGucagagaaGGUGUUgACCGUGGUCa -3'
miRNA:   3'- -GGCaCUCCuc------CCACAGgUGGUACCGG- -5'
3804 5' -57.7 NC_001650.1 + 42407 0.7 0.721872
Target:  5'- aCCGUGGGaaaaucucacagcccGGGGGgacucgcgccgaUCCACCAUGGCa -3'
miRNA:   3'- -GGCACUC---------------CUCCCac----------AGGUGGUACCGg -5'
3804 5' -57.7 NC_001650.1 + 127568 0.7 0.731385
Target:  5'- ---cGAGGGGGGcGaCCGCCcagGGCCa -3'
miRNA:   3'- ggcaCUCCUCCCaCaGGUGGua-CCGG- -5'
3804 5' -57.7 NC_001650.1 + 30861 0.69 0.759409
Target:  5'- uUCGagGAGGAGGacggCCGCC-UGGCCg -3'
miRNA:   3'- -GGCa-CUCCUCCcacaGGUGGuACCGG- -5'
3804 5' -57.7 NC_001650.1 + 135005 0.69 0.768552
Target:  5'- cCCGc-AGGGGGGUGagCACCA-GGCg -3'
miRNA:   3'- -GGCacUCCUCCCACagGUGGUaCCGg -5'
3804 5' -57.7 NC_001650.1 + 69587 0.69 0.776685
Target:  5'- cCCGagGGGGAuguccaaacccaaGaGGUGUCCuCgGUGGCCa -3'
miRNA:   3'- -GGCa-CUCCU-------------C-CCACAGGuGgUACCGG- -5'
3804 5' -57.7 NC_001650.1 + 2296 0.69 0.777582
Target:  5'- cCCgGUGaAGGGGGGaGcCCGCUgcGGCCu -3'
miRNA:   3'- -GG-CAC-UCCUCCCaCaGGUGGuaCCGG- -5'
3804 5' -57.7 NC_001650.1 + 52432 0.69 0.777582
Target:  5'- cCUGgGGGGAGGcagcgccuucaaGUgGUCCACCucgGGCCu -3'
miRNA:   3'- -GGCaCUCCUCC------------CA-CAGGUGGua-CCGG- -5'
3804 5' -57.7 NC_001650.1 + 169003 0.69 0.777582
Target:  5'- cCCgGUGaAGGGGGGaGcCCGCUgcGGCCu -3'
miRNA:   3'- -GG-CAC-UCCUCCCaCaGGUGGuaCCGG- -5'
3804 5' -57.7 NC_001650.1 + 142408 0.68 0.783832
Target:  5'- ---aGAGGGGGGUcUCUACgggcccgagggcauCAUGGCCg -3'
miRNA:   3'- ggcaCUCCUCCCAcAGGUG--------------GUACCGG- -5'
3804 5' -57.7 NC_001650.1 + 131674 0.68 0.786491
Target:  5'- uCCcUGAGGGGGGcgguggaggUGcUCaggACCGUGGCCc -3'
miRNA:   3'- -GGcACUCCUCCC---------AC-AGg--UGGUACCGG- -5'
3804 5' -57.7 NC_001650.1 + 25062 0.68 0.803914
Target:  5'- aCGUGGccAGcGG-GcCCGCCAUGGCCu -3'
miRNA:   3'- gGCACUccUC-CCaCaGGUGGUACCGG- -5'
3804 5' -57.7 NC_001650.1 + 43694 0.68 0.811569
Target:  5'- gCCaGUGAGGcggccacAGGGUcugCCACCAgaUGGCg -3'
miRNA:   3'- -GG-CACUCC-------UCCCAca-GGUGGU--ACCGg -5'
3804 5' -57.7 NC_001650.1 + 58643 0.68 0.812412
Target:  5'- -gGUGGGGuuGGGGggcagguggugGUCCGCCcUGGUCc -3'
miRNA:   3'- ggCACUCC--UCCCa----------CAGGUGGuACCGG- -5'
3804 5' -57.7 NC_001650.1 + 126898 0.68 0.812412
Target:  5'- ---cGGGuGGGGGUG-CCACCGgcgcuacGGCCg -3'
miRNA:   3'- ggcaCUC-CUCCCACaGGUGGUa------CCGG- -5'
3804 5' -57.7 NC_001650.1 + 110843 0.68 0.812412
Target:  5'- cCCGUcauagGGGGAGGGUGcgCCccuuuucaGCUAcgGGCCc -3'
miRNA:   3'- -GGCA-----CUCCUCCCACa-GG--------UGGUa-CCGG- -5'
3804 5' -57.7 NC_001650.1 + 52289 0.68 0.817438
Target:  5'- aCCGUGAGcAGGGcccacagcaggaaGcCCGCCcUGGCCc -3'
miRNA:   3'- -GGCACUCcUCCCa------------CaGGUGGuACCGG- -5'
3804 5' -57.7 NC_001650.1 + 58155 0.68 0.820758
Target:  5'- gCCG-GAuGGGGGGUGgUgGCgAUGGCUg -3'
miRNA:   3'- -GGCaCU-CCUCCCACaGgUGgUACCGG- -5'
3804 5' -57.7 NC_001650.1 + 87573 0.68 0.820758
Target:  5'- cCCGgaaAGGAGGccgcgaUGggCACCGUGGCCg -3'
miRNA:   3'- -GGCac-UCCUCCc-----ACagGUGGUACCGG- -5'
3804 5' -57.7 NC_001650.1 + 111613 0.68 0.828944
Target:  5'- gCGUGcGGAucaUGUCCACCGUGGgCg -3'
miRNA:   3'- gGCACuCCUcccACAGGUGGUACCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.