miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3804 5' -57.7 NC_001650.1 + 20920 1.14 0.001403
Target:  5'- gCCGUGAGGAGGGUGUCCACCAUGGCCa -3'
miRNA:   3'- -GGCACUCCUCCCACAGGUGGUACCGG- -5'
3804 5' -57.7 NC_001650.1 + 156454 0.78 0.30413
Target:  5'- gCGUGAgccuGGGGGcagaaGUGUCCACCcUGGCCu -3'
miRNA:   3'- gGCACU----CCUCC-----CACAGGUGGuACCGG- -5'
3804 5' -57.7 NC_001650.1 + 111126 0.75 0.444406
Target:  5'- aCCGUGAGGGcgaagcccGGGUGgaUCCugUucuUGGCCu -3'
miRNA:   3'- -GGCACUCCU--------CCCAC--AGGugGu--ACCGG- -5'
3804 5' -57.7 NC_001650.1 + 7611 0.74 0.471114
Target:  5'- -gGUGAGGuGGGUGgcCCGCCAUugGGCg -3'
miRNA:   3'- ggCACUCCuCCCACa-GGUGGUA--CCGg -5'
3804 5' -57.7 NC_001650.1 + 174318 0.74 0.471114
Target:  5'- -gGUGAGGuGGGUGgcCCGCCAUugGGCg -3'
miRNA:   3'- ggCACUCCuCCCACa-GGUGGUA--CCGg -5'
3804 5' -57.7 NC_001650.1 + 74517 0.73 0.51451
Target:  5'- aCCGUGGugcccccgguguuuGGcAGGGaGgccgCCACCGUGGCCc -3'
miRNA:   3'- -GGCACU--------------CC-UCCCaCa---GGUGGUACCGG- -5'
3804 5' -57.7 NC_001650.1 + 87303 0.72 0.565266
Target:  5'- --aUGAGGgugGGGGUucCCACCAUGGCUa -3'
miRNA:   3'- ggcACUCC---UCCCAcaGGUGGUACCGG- -5'
3804 5' -57.7 NC_001650.1 + 117282 0.71 0.624135
Target:  5'- cCCGUGAGcuGGGaGGUGcCCGCgGUGGgCa -3'
miRNA:   3'- -GGCACUC--CUC-CCACaGGUGgUACCgG- -5'
3804 5' -57.7 NC_001650.1 + 25630 0.71 0.653734
Target:  5'- cCCGcccucuacAGGAGGGUGUCCACgGacGCCu -3'
miRNA:   3'- -GGCac------UCCUCCCACAGGUGgUacCGG- -5'
3804 5' -57.7 NC_001650.1 + 110525 0.71 0.653734
Target:  5'- gCUGcGAGGcccAGGG-GUUgACCGUGGCCc -3'
miRNA:   3'- -GGCaCUCC---UCCCaCAGgUGGUACCGG- -5'
3804 5' -57.7 NC_001650.1 + 147477 0.71 0.653734
Target:  5'- cCCG-GGcGAGGG-GUCUaugACCGUGGCCc -3'
miRNA:   3'- -GGCaCUcCUCCCaCAGG---UGGUACCGG- -5'
3804 5' -57.7 NC_001650.1 + 90808 0.71 0.662594
Target:  5'- aCGUGGGGGGcaGGUugaugcuGUCCACCA-GGUCc -3'
miRNA:   3'- gGCACUCCUC--CCA-------CAGGUGGUaCCGG- -5'
3804 5' -57.7 NC_001650.1 + 86235 0.71 0.663578
Target:  5'- --uUGAGGAGGGcGacgaggCCACCGaGGCCu -3'
miRNA:   3'- ggcACUCCUCCCaCa-----GGUGGUaCCGG- -5'
3804 5' -57.7 NC_001650.1 + 50057 0.7 0.683188
Target:  5'- gCGUGGGGAGGGccGcCCGCgGUcGCCc -3'
miRNA:   3'- gGCACUCCUCCCa-CaGGUGgUAcCGG- -5'
3804 5' -57.7 NC_001650.1 + 90833 0.7 0.683188
Target:  5'- ---aGGGuGGGGGUGcCCAUCuUGGCCa -3'
miRNA:   3'- ggcaCUC-CUCCCACaGGUGGuACCGG- -5'
3804 5' -57.7 NC_001650.1 + 10831 0.7 0.683188
Target:  5'- --aUGGGGgccgAGGGgGUaCUACCAUGGCCa -3'
miRNA:   3'- ggcACUCC----UCCCaCA-GGUGGUACCGG- -5'
3804 5' -57.7 NC_001650.1 + 114758 0.7 0.683188
Target:  5'- gCGcGAGGAaugGGGUG-CCggGCCcgGGCCg -3'
miRNA:   3'- gGCaCUCCU---CCCACaGG--UGGuaCCGG- -5'
3804 5' -57.7 NC_001650.1 + 177538 0.7 0.683188
Target:  5'- --aUGGGGgccgAGGGgGUaCUACCAUGGCCa -3'
miRNA:   3'- ggcACUCC----UCCCaCA-GGUGGUACCGG- -5'
3804 5' -57.7 NC_001650.1 + 59895 0.7 0.684164
Target:  5'- cCCGUGuugGGGAGGacucgcgccaccucGUCCGCCGcGGCCu -3'
miRNA:   3'- -GGCAC---UCCUCCca------------CAGGUGGUaCCGG- -5'
3804 5' -57.7 NC_001650.1 + 72960 0.7 0.692938
Target:  5'- ---cGAGGAGuGGcacaaGUCCcCCAUGGCCc -3'
miRNA:   3'- ggcaCUCCUC-CCa----CAGGuGGUACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.