miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3804 5' -57.7 NC_001650.1 + 58182 0.67 0.859959
Target:  5'- gCCGUG-GGAGGGUcUUCGCC---GCCc -3'
miRNA:   3'- -GGCACuCCUCCCAcAGGUGGuacCGG- -5'
3804 5' -57.7 NC_001650.1 + 131674 0.68 0.786491
Target:  5'- uCCcUGAGGGGGGcgguggaggUGcUCaggACCGUGGCCc -3'
miRNA:   3'- -GGcACUCCUCCC---------AC-AGg--UGGUACCGG- -5'
3804 5' -57.7 NC_001650.1 + 25062 0.68 0.803914
Target:  5'- aCGUGGccAGcGG-GcCCGCCAUGGCCu -3'
miRNA:   3'- gGCACUccUC-CCaCaGGUGGUACCGG- -5'
3804 5' -57.7 NC_001650.1 + 43694 0.68 0.811569
Target:  5'- gCCaGUGAGGcggccacAGGGUcugCCACCAgaUGGCg -3'
miRNA:   3'- -GG-CACUCC-------UCCCAca-GGUGGU--ACCGg -5'
3804 5' -57.7 NC_001650.1 + 58643 0.68 0.812412
Target:  5'- -gGUGGGGuuGGGGggcagguggugGUCCGCCcUGGUCc -3'
miRNA:   3'- ggCACUCC--UCCCa----------CAGGUGGuACCGG- -5'
3804 5' -57.7 NC_001650.1 + 110843 0.68 0.812412
Target:  5'- cCCGUcauagGGGGAGGGUGcgCCccuuuucaGCUAcgGGCCc -3'
miRNA:   3'- -GGCA-----CUCCUCCCACa-GG--------UGGUa-CCGG- -5'
3804 5' -57.7 NC_001650.1 + 58155 0.68 0.820758
Target:  5'- gCCG-GAuGGGGGGUGgUgGCgAUGGCUg -3'
miRNA:   3'- -GGCaCU-CCUCCCACaGgUGgUACCGG- -5'
3804 5' -57.7 NC_001650.1 + 87573 0.68 0.820758
Target:  5'- cCCGgaaAGGAGGccgcgaUGggCACCGUGGCCg -3'
miRNA:   3'- -GGCac-UCCUCCc-----ACagGUGGUACCGG- -5'
3804 5' -57.7 NC_001650.1 + 86112 0.67 0.844811
Target:  5'- uCCGccGAGGAGGaGUuuagccaUCCGCCAUGGgUa -3'
miRNA:   3'- -GGCa-CUCCUCC-CAc------AGGUGGUACCgG- -5'
3804 5' -57.7 NC_001650.1 + 142408 0.68 0.783832
Target:  5'- ---aGAGGGGGGUcUCUACgggcccgagggcauCAUGGCCg -3'
miRNA:   3'- ggcaCUCCUCCCAcAGGUG--------------GUACCGG- -5'
3804 5' -57.7 NC_001650.1 + 30861 0.69 0.759409
Target:  5'- uUCGagGAGGAGGacggCCGCC-UGGCCg -3'
miRNA:   3'- -GGCa-CUCCUCCcacaGGUGGuACCGG- -5'
3804 5' -57.7 NC_001650.1 + 127568 0.7 0.731385
Target:  5'- ---cGAGGGGGGcGaCCGCCcagGGCCa -3'
miRNA:   3'- ggcaCUCCUCCCaCaGGUGGua-CCGG- -5'
3804 5' -57.7 NC_001650.1 + 7611 0.74 0.471114
Target:  5'- -gGUGAGGuGGGUGgcCCGCCAUugGGCg -3'
miRNA:   3'- ggCACUCCuCCCACa-GGUGGUA--CCGg -5'
3804 5' -57.7 NC_001650.1 + 174318 0.74 0.471114
Target:  5'- -gGUGAGGuGGGUGgcCCGCCAUugGGCg -3'
miRNA:   3'- ggCACUCCuCCCACa-GGUGGUA--CCGg -5'
3804 5' -57.7 NC_001650.1 + 74517 0.73 0.51451
Target:  5'- aCCGUGGugcccccgguguuuGGcAGGGaGgccgCCACCGUGGCCc -3'
miRNA:   3'- -GGCACU--------------CC-UCCCaCa---GGUGGUACCGG- -5'
3804 5' -57.7 NC_001650.1 + 87303 0.72 0.565266
Target:  5'- --aUGAGGgugGGGGUucCCACCAUGGCUa -3'
miRNA:   3'- ggcACUCC---UCCCAcaGGUGGUACCGG- -5'
3804 5' -57.7 NC_001650.1 + 117282 0.71 0.624135
Target:  5'- cCCGUGAGcuGGGaGGUGcCCGCgGUGGgCa -3'
miRNA:   3'- -GGCACUC--CUC-CCACaGGUGgUACCgG- -5'
3804 5' -57.7 NC_001650.1 + 90808 0.71 0.662594
Target:  5'- aCGUGGGGGGcaGGUugaugcuGUCCACCA-GGUCc -3'
miRNA:   3'- gGCACUCCUC--CCA-------CAGGUGGUaCCGG- -5'
3804 5' -57.7 NC_001650.1 + 86235 0.71 0.663578
Target:  5'- --uUGAGGAGGGcGacgaggCCACCGaGGCCu -3'
miRNA:   3'- ggcACUCCUCCCaCa-----GGUGGUaCCGG- -5'
3804 5' -57.7 NC_001650.1 + 72960 0.7 0.692938
Target:  5'- ---cGAGGAGuGGcacaaGUCCcCCAUGGCCc -3'
miRNA:   3'- ggcaCUCCUC-CCa----CAGGuGGUACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.