miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3804 5' -57.7 NC_001650.1 + 989 0.67 0.836964
Target:  5'- -gGUGGGGuggcaucuugguGGGGUGgCCAUCuuggugggGUGGCCa -3'
miRNA:   3'- ggCACUCC------------UCCCACaGGUGG--------UACCGG- -5'
3804 5' -57.7 NC_001650.1 + 2296 0.69 0.777582
Target:  5'- cCCgGUGaAGGGGGGaGcCCGCUgcGGCCu -3'
miRNA:   3'- -GG-CAC-UCCUCCCaCaGGUGGuaCCGG- -5'
3804 5' -57.7 NC_001650.1 + 2844 0.67 0.839337
Target:  5'- uCCGcGAGGAGGGggggagagaggccggCCGCCcgGGUUc -3'
miRNA:   3'- -GGCaCUCCUCCCaca------------GGUGGuaCCGG- -5'
3804 5' -57.7 NC_001650.1 + 5341 0.66 0.910808
Target:  5'- -gGUGGGGAGGcggccaucuugucuGUG-CCGCgGcGGCCa -3'
miRNA:   3'- ggCACUCCUCC--------------CACaGGUGgUaCCGG- -5'
3804 5' -57.7 NC_001650.1 + 7611 0.74 0.471114
Target:  5'- -gGUGAGGuGGGUGgcCCGCCAUugGGCg -3'
miRNA:   3'- ggCACUCCuCCCACa-GGUGGUA--CCGg -5'
3804 5' -57.7 NC_001650.1 + 10831 0.7 0.683188
Target:  5'- --aUGGGGgccgAGGGgGUaCUACCAUGGCCa -3'
miRNA:   3'- ggcACUCC----UCCCaCA-GGUGGUACCGG- -5'
3804 5' -57.7 NC_001650.1 + 18440 0.67 0.867249
Target:  5'- gUGUGuGGGGGGGUGUaggagaugucCCACa--GGCCc -3'
miRNA:   3'- gGCAC-UCCUCCCACA----------GGUGguaCCGG- -5'
3804 5' -57.7 NC_001650.1 + 20679 0.66 0.900659
Target:  5'- aCGggGGGGAcGGGggGUCUgguGCCG-GGCCg -3'
miRNA:   3'- gGCa-CUCCU-CCCa-CAGG---UGGUaCCGG- -5'
3804 5' -57.7 NC_001650.1 + 20722 0.67 0.867249
Target:  5'- cCUGcUGAGGuuuGGGUacaCGCCAUgGGCCa -3'
miRNA:   3'- -GGC-ACUCCu--CCCAcagGUGGUA-CCGG- -5'
3804 5' -57.7 NC_001650.1 + 20920 1.14 0.001403
Target:  5'- gCCGUGAGGAGGGUGUCCACCAUGGCCa -3'
miRNA:   3'- -GGCACUCCUCCCACAGGUGGUACCGG- -5'
3804 5' -57.7 NC_001650.1 + 21790 0.66 0.894396
Target:  5'- aCGccGGGGAGGGcGcCgGCCGaGGCCc -3'
miRNA:   3'- gGCa-CUCCUCCCaCaGgUGGUaCCGG- -5'
3804 5' -57.7 NC_001650.1 + 25062 0.68 0.803914
Target:  5'- aCGUGGccAGcGG-GcCCGCCAUGGCCu -3'
miRNA:   3'- gGCACUccUC-CCaCaGGUGGUACCGG- -5'
3804 5' -57.7 NC_001650.1 + 25630 0.71 0.653734
Target:  5'- cCCGcccucuacAGGAGGGUGUCCACgGacGCCu -3'
miRNA:   3'- -GGCac------UCCUCCCACAGGUGgUacCGG- -5'
3804 5' -57.7 NC_001650.1 + 26437 0.66 0.912534
Target:  5'- cCCGUgGAGGAGaacGUGggCACCcaGGCCa -3'
miRNA:   3'- -GGCA-CUCCUCc--CACagGUGGuaCCGG- -5'
3804 5' -57.7 NC_001650.1 + 30861 0.69 0.759409
Target:  5'- uUCGagGAGGAGGacggCCGCC-UGGCCg -3'
miRNA:   3'- -GGCa-CUCCUCCcacaGGUGGuACCGG- -5'
3804 5' -57.7 NC_001650.1 + 42407 0.7 0.721872
Target:  5'- aCCGUGGGaaaaucucacagcccGGGGGgacucgcgccgaUCCACCAUGGCa -3'
miRNA:   3'- -GGCACUC---------------CUCCCac----------AGGUGGUACCGg -5'
3804 5' -57.7 NC_001650.1 + 42537 0.67 0.859959
Target:  5'- -gGUGAGGAGGaccgCCGCaCGgagGGCCu -3'
miRNA:   3'- ggCACUCCUCCcacaGGUG-GUa--CCGG- -5'
3804 5' -57.7 NC_001650.1 + 43694 0.68 0.811569
Target:  5'- gCCaGUGAGGcggccacAGGGUcugCCACCAgaUGGCg -3'
miRNA:   3'- -GG-CACUCC-------UCCCAca-GGUGGU--ACCGg -5'
3804 5' -57.7 NC_001650.1 + 47944 0.66 0.88792
Target:  5'- aCCGgGGGGAGGGuUGcCCGagaCA-GGCUg -3'
miRNA:   3'- -GGCaCUCCUCCC-ACaGGUg--GUaCCGG- -5'
3804 5' -57.7 NC_001650.1 + 50057 0.7 0.683188
Target:  5'- gCGUGGGGAGGGccGcCCGCgGUcGCCc -3'
miRNA:   3'- gGCACUCCUCCCa-CaGGUGgUAcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.