Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3825 | 3' | -49.7 | NC_001650.1 | + | 254 | 1.09 | 0.013069 |
Target: 5'- gCUUCAGCGUCAACCAAUCAGAGCACGu -3' miRNA: 3'- -GAAGUCGCAGUUGGUUAGUCUCGUGC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 166961 | 1.09 | 0.013069 |
Target: 5'- gCUUCAGCGUCAACCAAUCAGAGCACGu -3' miRNA: 3'- -GAAGUCGCAGUUGGUUAGUCUCGUGC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 53703 | 0.84 | 0.381576 |
Target: 5'- --cCGGCucUCGACCAAUCAGAGCGCGg -3' miRNA: 3'- gaaGUCGc-AGUUGGUUAGUCUCGUGC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 43467 | 0.83 | 0.444486 |
Target: 5'- --cCAGCuagcucUCGACCAAUCAGAGCGCGg -3' miRNA: 3'- gaaGUCGc-----AGUUGGUUAGUCUCGUGC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 120688 | 0.77 | 0.751958 |
Target: 5'- aCUUCAGCaaCAGCCAAgugCAGuAGCACGc -3' miRNA: 3'- -GAAGUCGcaGUUGGUUa--GUC-UCGUGC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 130539 | 0.75 | 0.818296 |
Target: 5'- --cCGGCuggcccucUCGGCCAAUCAGAGCGCa -3' miRNA: 3'- gaaGUCGc-------AGUUGGUUAGUCUCGUGc -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 125118 | 0.74 | 0.890266 |
Target: 5'- -gUCAGCGgcccgaaCAGCCAggCAGAGgGCGa -3' miRNA: 3'- gaAGUCGCa------GUUGGUuaGUCUCgUGC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 130583 | 0.73 | 0.922055 |
Target: 5'- --aCAGCucccUCGGCCAAUgAGAGCGCa -3' miRNA: 3'- gaaGUCGc---AGUUGGUUAgUCUCGUGc -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 53413 | 0.72 | 0.932994 |
Target: 5'- -gUCGGgGUCAACCGgcgGUCAGAGgGgGg -3' miRNA: 3'- gaAGUCgCAGUUGGU---UAGUCUCgUgC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 43182 | 0.72 | 0.938079 |
Target: 5'- -cUCGGgGUCAACCGgcgGUCAGAGgGgGg -3' miRNA: 3'- gaAGUCgCAGUUGGU---UAGUCUCgUgC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 64483 | 0.72 | 0.942911 |
Target: 5'- --cCAGCGUCAACUAuguucUCAGAccccaGCACGc -3' miRNA: 3'- gaaGUCGCAGUUGGUu----AGUCU-----CGUGC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 49536 | 0.7 | 0.969872 |
Target: 5'- ---gGGgGUCAGCCucUCAGAGCgACGu -3' miRNA: 3'- gaagUCgCAGUUGGuuAGUCUCG-UGC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 126163 | 0.7 | 0.972801 |
Target: 5'- -aUCAGCGU--GCCc--CGGAGCACGu -3' miRNA: 3'- gaAGUCGCAguUGGuuaGUCUCGUGC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 135296 | 0.7 | 0.972801 |
Target: 5'- ---aGGUGUUGACCAccGUCAGGGCGgCGg -3' miRNA: 3'- gaagUCGCAGUUGGU--UAGUCUCGU-GC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 104920 | 0.7 | 0.972801 |
Target: 5'- uCUUCAG-GUCAAUCAGguUCAGcGCGCa -3' miRNA: 3'- -GAAGUCgCAGUUGGUU--AGUCuCGUGc -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 138235 | 0.7 | 0.975518 |
Target: 5'- --cCuGCGcucUCGGCCAAUCGGcGCGCGg -3' miRNA: 3'- gaaGuCGC---AGUUGGUUAGUCuCGUGC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 130681 | 0.69 | 0.984432 |
Target: 5'- -aUCAGCGUCGAgCAG-CAGaAGCuCGa -3' miRNA: 3'- gaAGUCGCAGUUgGUUaGUC-UCGuGC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 155756 | 0.69 | 0.987835 |
Target: 5'- -cUCGGUG-CAGCCGggCAGgcacAGCACGg -3' miRNA: 3'- gaAGUCGCaGUUGGUuaGUC----UCGUGC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 120534 | 0.69 | 0.989305 |
Target: 5'- -cUgGGCGccggCGACCug-CAGGGCGCGg -3' miRNA: 3'- gaAgUCGCa---GUUGGuuaGUCUCGUGC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 137957 | 0.68 | 0.992897 |
Target: 5'- -cUCGGgGUCAGCCAc-CGGucGCGCGg -3' miRNA: 3'- gaAGUCgCAGUUGGUuaGUCu-CGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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