Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3825 | 3' | -49.7 | NC_001650.1 | + | 254 | 1.09 | 0.013069 |
Target: 5'- gCUUCAGCGUCAACCAAUCAGAGCACGu -3' miRNA: 3'- -GAAGUCGCAGUUGGUUAGUCUCGUGC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 59975 | 0.66 | 0.998027 |
Target: 5'- --cCAGgGUCAGCCg--CAGGGCGg- -3' miRNA: 3'- gaaGUCgCAGUUGGuuaGUCUCGUgc -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 146986 | 0.67 | 0.997646 |
Target: 5'- --cCGGgGcUCugGACCAAUCAGAGgGCGc -3' miRNA: 3'- gaaGUCgC-AG--UUGGUUAGUCUCgUGC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 108907 | 0.67 | 0.997205 |
Target: 5'- --cCuGCGUCcACUAcgCGGAGCugGc -3' miRNA: 3'- gaaGuCGCAGuUGGUuaGUCUCGugC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 23000 | 0.67 | 0.997205 |
Target: 5'- cCUUCGGCugccggGUCAGCCugcUCGG-GCACc -3' miRNA: 3'- -GAAGUCG------CAGUUGGuu-AGUCuCGUGc -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 32608 | 0.67 | 0.997205 |
Target: 5'- gCUUUAGCGccguacaggUCAACgAGggGGGGCACGu -3' miRNA: 3'- -GAAGUCGC---------AGUUGgUUagUCUCGUGC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 33731 | 0.67 | 0.995454 |
Target: 5'- -aUCAGUGUUGACCAAa-AGAGCGu- -3' miRNA: 3'- gaAGUCGCAGUUGGUUagUCUCGUgc -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 75714 | 0.67 | 0.995454 |
Target: 5'- -gUCAGCGcCAGCguGUUGGGGCuCGu -3' miRNA: 3'- gaAGUCGCaGUUGguUAGUCUCGuGC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 71011 | 0.67 | 0.995238 |
Target: 5'- --cCAGCGUCGaggacgaccugaacGCC-AUCucGAGCGCGg -3' miRNA: 3'- gaaGUCGCAGU--------------UGGuUAGu-CUCGUGC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 120534 | 0.69 | 0.989305 |
Target: 5'- -cUgGGCGccggCGACCug-CAGGGCGCGg -3' miRNA: 3'- gaAgUCGCa---GUUGGuuaGUCUCGUGC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 166961 | 1.09 | 0.013069 |
Target: 5'- gCUUCAGCGUCAACCAAUCAGAGCACGu -3' miRNA: 3'- -GAAGUCGCAGUUGGUUAGUCUCGUGC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 53703 | 0.84 | 0.381576 |
Target: 5'- --cCGGCucUCGACCAAUCAGAGCGCGg -3' miRNA: 3'- gaaGUCGc-AGUUGGUUAGUCUCGUGC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 125118 | 0.74 | 0.890266 |
Target: 5'- -gUCAGCGgcccgaaCAGCCAggCAGAGgGCGa -3' miRNA: 3'- gaAGUCGCa------GUUGGUuaGUCUCgUGC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 53413 | 0.72 | 0.932994 |
Target: 5'- -gUCGGgGUCAACCGgcgGUCAGAGgGgGg -3' miRNA: 3'- gaAGUCgCAGUUGGU---UAGUCUCgUgC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 64483 | 0.72 | 0.942911 |
Target: 5'- --cCAGCGUCAACUAuguucUCAGAccccaGCACGc -3' miRNA: 3'- gaaGUCGCAGUUGGUu----AGUCU-----CGUGC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 155756 | 0.69 | 0.987835 |
Target: 5'- -cUCGGUG-CAGCCGggCAGgcacAGCACGg -3' miRNA: 3'- gaAGUCGCaGUUGGUuaGUC----UCGUGC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 182943 | 0.66 | 0.998875 |
Target: 5'- -aUgGGCGUCccaucuAGCCAAUgGGGGCcCGg -3' miRNA: 3'- gaAgUCGCAG------UUGGUUAgUCUCGuGC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 120688 | 0.77 | 0.751958 |
Target: 5'- aCUUCAGCaaCAGCCAAgugCAGuAGCACGc -3' miRNA: 3'- -GAAGUCGcaGUUGGUUa--GUC-UCGUGC- -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 130539 | 0.75 | 0.818296 |
Target: 5'- --cCGGCuggcccucUCGGCCAAUCAGAGCGCa -3' miRNA: 3'- gaaGUCGc-------AGUUGGUUAGUCUCGUGc -5' |
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3825 | 3' | -49.7 | NC_001650.1 | + | 130583 | 0.73 | 0.922055 |
Target: 5'- --aCAGCucccUCGGCCAAUgAGAGCGCa -3' miRNA: 3'- gaaGUCGc---AGUUGGUUAgUCUCGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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