miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3825 3' -49.7 NC_001650.1 + 254 1.09 0.013069
Target:  5'- gCUUCAGCGUCAACCAAUCAGAGCACGu -3'
miRNA:   3'- -GAAGUCGCAGUUGGUUAGUCUCGUGC- -5'
3825 3' -49.7 NC_001650.1 + 16236 0.66 0.998875
Target:  5'- -aUgGGCGUCccaucuAGCCAAUgGGGGCcCGg -3'
miRNA:   3'- gaAgUCGCAG------UUGGUUAgUCUCGuGC- -5'
3825 3' -49.7 NC_001650.1 + 23000 0.67 0.997205
Target:  5'- cCUUCGGCugccggGUCAGCCugcUCGG-GCACc -3'
miRNA:   3'- -GAAGUCG------CAGUUGGuu-AGUCuCGUGc -5'
3825 3' -49.7 NC_001650.1 + 32608 0.67 0.997205
Target:  5'- gCUUUAGCGccguacaggUCAACgAGggGGGGCACGu -3'
miRNA:   3'- -GAAGUCGC---------AGUUGgUUagUCUCGUGC- -5'
3825 3' -49.7 NC_001650.1 + 33731 0.67 0.995454
Target:  5'- -aUCAGUGUUGACCAAa-AGAGCGu- -3'
miRNA:   3'- gaAGUCGCAGUUGGUUagUCUCGUgc -5'
3825 3' -49.7 NC_001650.1 + 43182 0.72 0.938079
Target:  5'- -cUCGGgGUCAACCGgcgGUCAGAGgGgGg -3'
miRNA:   3'- gaAGUCgCAGUUGGU---UAGUCUCgUgC- -5'
3825 3' -49.7 NC_001650.1 + 43467 0.83 0.444486
Target:  5'- --cCAGCuagcucUCGACCAAUCAGAGCGCGg -3'
miRNA:   3'- gaaGUCGc-----AGUUGGUUAGUCUCGUGC- -5'
3825 3' -49.7 NC_001650.1 + 49536 0.7 0.969872
Target:  5'- ---gGGgGUCAGCCucUCAGAGCgACGu -3'
miRNA:   3'- gaagUCgCAGUUGGuuAGUCUCG-UGC- -5'
3825 3' -49.7 NC_001650.1 + 53413 0.72 0.932994
Target:  5'- -gUCGGgGUCAACCGgcgGUCAGAGgGgGg -3'
miRNA:   3'- gaAGUCgCAGUUGGU---UAGUCUCgUgC- -5'
3825 3' -49.7 NC_001650.1 + 53703 0.84 0.381576
Target:  5'- --cCGGCucUCGACCAAUCAGAGCGCGg -3'
miRNA:   3'- gaaGUCGc-AGUUGGUUAGUCUCGUGC- -5'
3825 3' -49.7 NC_001650.1 + 59975 0.66 0.998027
Target:  5'- --cCAGgGUCAGCCg--CAGGGCGg- -3'
miRNA:   3'- gaaGUCgCAGUUGGuuaGUCUCGUgc -5'
3825 3' -49.7 NC_001650.1 + 64483 0.72 0.942911
Target:  5'- --cCAGCGUCAACUAuguucUCAGAccccaGCACGc -3'
miRNA:   3'- gaaGUCGCAGUUGGUu----AGUCU-----CGUGC- -5'
3825 3' -49.7 NC_001650.1 + 71011 0.67 0.995238
Target:  5'- --cCAGCGUCGaggacgaccugaacGCC-AUCucGAGCGCGg -3'
miRNA:   3'- gaaGUCGCAGU--------------UGGuUAGu-CUCGUGC- -5'
3825 3' -49.7 NC_001650.1 + 75714 0.67 0.995454
Target:  5'- -gUCAGCGcCAGCguGUUGGGGCuCGu -3'
miRNA:   3'- gaAGUCGCaGUUGguUAGUCUCGuGC- -5'
3825 3' -49.7 NC_001650.1 + 104920 0.7 0.972801
Target:  5'- uCUUCAG-GUCAAUCAGguUCAGcGCGCa -3'
miRNA:   3'- -GAAGUCgCAGUUGGUU--AGUCuCGUGc -5'
3825 3' -49.7 NC_001650.1 + 108907 0.67 0.997205
Target:  5'- --cCuGCGUCcACUAcgCGGAGCugGc -3'
miRNA:   3'- gaaGuCGCAGuUGGUuaGUCUCGugC- -5'
3825 3' -49.7 NC_001650.1 + 115580 0.66 0.998875
Target:  5'- --cCGGUGagCAGCCucUCGGuGCACGg -3'
miRNA:   3'- gaaGUCGCa-GUUGGuuAGUCuCGUGC- -5'
3825 3' -49.7 NC_001650.1 + 120534 0.69 0.989305
Target:  5'- -cUgGGCGccggCGACCug-CAGGGCGCGg -3'
miRNA:   3'- gaAgUCGCa---GUUGGuuaGUCUCGUGC- -5'
3825 3' -49.7 NC_001650.1 + 120688 0.77 0.751958
Target:  5'- aCUUCAGCaaCAGCCAAgugCAGuAGCACGc -3'
miRNA:   3'- -GAAGUCGcaGUUGGUUa--GUC-UCGUGC- -5'
3825 3' -49.7 NC_001650.1 + 125118 0.74 0.890266
Target:  5'- -gUCAGCGgcccgaaCAGCCAggCAGAGgGCGa -3'
miRNA:   3'- gaAGUCGCa------GUUGGUuaGUCUCgUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.