Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3825 | 5' | -65.6 | NC_001650.1 | + | 289 | 1.06 | 0.000758 |
Target: 5'- cAGCGCCCCCUGCCGGCCGAGGCGAUAg -3' miRNA: 3'- -UCGCGGGGGACGGCCGGCUCCGCUAU- -5' |
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3825 | 5' | -65.6 | NC_001650.1 | + | 166996 | 1.06 | 0.000758 |
Target: 5'- cAGCGCCCCCUGCCGGCCGAGGCGAUAg -3' miRNA: 3'- -UCGCGGGGGACGGCCGGCUCCGCUAU- -5' |
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3825 | 5' | -65.6 | NC_001650.1 | + | 62833 | 0.78 | 0.081939 |
Target: 5'- cGGCGCCCCC----GGCCGGGGCGAUGg -3' miRNA: 3'- -UCGCGGGGGacggCCGGCUCCGCUAU- -5' |
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3825 | 5' | -65.6 | NC_001650.1 | + | 90190 | 0.77 | 0.095153 |
Target: 5'- uGGCGCCCCCUGgCGGCgGuGGgGAa- -3' miRNA: 3'- -UCGCGGGGGACgGCCGgCuCCgCUau -5' |
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3825 | 5' | -65.6 | NC_001650.1 | + | 131809 | 0.74 | 0.158868 |
Target: 5'- cAGgGCCuUCCUGUucaGGCCGGGGCGGUGg -3' miRNA: 3'- -UCgCGG-GGGACGg--CCGGCUCCGCUAU- -5' |
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3825 | 5' | -65.6 | NC_001650.1 | + | 158351 | 0.74 | 0.162709 |
Target: 5'- aGGCGCCCCCcucGgCGGCCGGGGUc--- -3' miRNA: 3'- -UCGCGGGGGa--CgGCCGGCUCCGcuau -5' |
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3825 | 5' | -65.6 | NC_001650.1 | + | 105550 | 0.74 | 0.170641 |
Target: 5'- cGCGUCCUCcGCCaGGCCGuGGCGGUc -3' miRNA: 3'- uCGCGGGGGaCGG-CCGGCuCCGCUAu -5' |
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3825 | 5' | -65.6 | NC_001650.1 | + | 21771 | 0.73 | 0.183188 |
Target: 5'- cGGCGCCCCCUggugggggacGCCggggagggcgccGGCCGAGGCc--- -3' miRNA: 3'- -UCGCGGGGGA----------CGG------------CCGGCUCCGcuau -5' |
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3825 | 5' | -65.6 | NC_001650.1 | + | 60617 | 0.73 | 0.187549 |
Target: 5'- gGGCGUaggcgCCCUGCCGGuuGAGGgGGg- -3' miRNA: 3'- -UCGCGg----GGGACGGCCggCUCCgCUau -5' |
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3825 | 5' | -65.6 | NC_001650.1 | + | 129852 | 0.73 | 0.189318 |
Target: 5'- gAGCuuCCCCCUGCCcaagcucaaccggcaGGCCGAGGCcGUGg -3' miRNA: 3'- -UCGc-GGGGGACGG---------------CCGGCUCCGcUAU- -5' |
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3825 | 5' | -65.6 | NC_001650.1 | + | 90095 | 0.73 | 0.196544 |
Target: 5'- aGGCGCCgUgUGCUGGCaCGAGGCGc-- -3' miRNA: 3'- -UCGCGGgGgACGGCCG-GCUCCGCuau -5' |
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3825 | 5' | -65.6 | NC_001650.1 | + | 75312 | 0.73 | 0.196544 |
Target: 5'- cAGCGcCCCCCUG-CGGCCGcGGaCGAg- -3' miRNA: 3'- -UCGC-GGGGGACgGCCGGCuCC-GCUau -5' |
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3825 | 5' | -65.6 | NC_001650.1 | + | 96008 | 0.72 | 0.205914 |
Target: 5'- cGCGgaggCCUC-GCCGGCCGAGGCGGg- -3' miRNA: 3'- uCGCg---GGGGaCGGCCGGCUCCGCUau -5' |
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3825 | 5' | -65.6 | NC_001650.1 | + | 41321 | 0.72 | 0.225814 |
Target: 5'- gAGCGCgCCggCUGCacgGGCCGGGGCGGc- -3' miRNA: 3'- -UCGCGgGG--GACGg--CCGGCUCCGCUau -5' |
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3825 | 5' | -65.6 | NC_001650.1 | + | 145772 | 0.71 | 0.247322 |
Target: 5'- aGGCGCCCCCUcCCGGuuGcggagcGGCGGc- -3' miRNA: 3'- -UCGCGGGGGAcGGCCggCu-----CCGCUau -5' |
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3825 | 5' | -65.6 | NC_001650.1 | + | 110673 | 0.71 | 0.247322 |
Target: 5'- cGCGCCCCCucgggcgaUGCCGGaCCGGGacccaGCGGg- -3' miRNA: 3'- uCGCGGGGG--------ACGGCC-GGCUC-----CGCUau -5' |
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3825 | 5' | -65.6 | NC_001650.1 | + | 42955 | 0.71 | 0.25239 |
Target: 5'- cGCGCCCgCUcGCCgccgcggGGCCGAgGGCGAa- -3' miRNA: 3'- uCGCGGGgGA-CGG-------CCGGCU-CCGCUau -5' |
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3825 | 5' | -65.6 | NC_001650.1 | + | 145945 | 0.71 | 0.258699 |
Target: 5'- uGUGCCCCagcCCGGCCcGGGCGAg- -3' miRNA: 3'- uCGCGGGGgacGGCCGGcUCCGCUau -5' |
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3825 | 5' | -65.6 | NC_001650.1 | + | 142615 | 0.7 | 0.294106 |
Target: 5'- cGCGCCCgCCgucaagcagcagGCCGGCgGAGGgGGc- -3' miRNA: 3'- uCGCGGG-GGa-----------CGGCCGgCUCCgCUau -5' |
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3825 | 5' | -65.6 | NC_001650.1 | + | 41590 | 0.7 | 0.295391 |
Target: 5'- cGCaGCCCCCUccGCCGGCCugcugcuuGAcGGCGGg- -3' miRNA: 3'- uCG-CGGGGGA--CGGCCGG--------CU-CCGCUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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