miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3825 5' -65.6 NC_001650.1 + 289 1.06 0.000758
Target:  5'- cAGCGCCCCCUGCCGGCCGAGGCGAUAg -3'
miRNA:   3'- -UCGCGGGGGACGGCCGGCUCCGCUAU- -5'
3825 5' -65.6 NC_001650.1 + 13083 0.67 0.428877
Target:  5'- cGGCccgGCCCUCUG-CGGUCGAGGCc--- -3'
miRNA:   3'- -UCG---CGGGGGACgGCCGGCUCCGcuau -5'
3825 5' -65.6 NC_001650.1 + 21289 0.69 0.343163
Target:  5'- uGCucaucuCCCCCUGCCuGCCGAGGUaGAg- -3'
miRNA:   3'- uCGc-----GGGGGACGGcCGGCUCCG-CUau -5'
3825 5' -65.6 NC_001650.1 + 21771 0.73 0.183188
Target:  5'- cGGCGCCCCCUggugggggacGCCggggagggcgccGGCCGAGGCc--- -3'
miRNA:   3'- -UCGCGGGGGA----------CGG------------CCGGCUCCGcuau -5'
3825 5' -65.6 NC_001650.1 + 23345 0.66 0.525977
Target:  5'- uGGgGCCCCuggacCUGCCcguGGCCGAcuacucuauGGUGGUGg -3'
miRNA:   3'- -UCgCGGGG-----GACGG---CCGGCU---------CCGCUAU- -5'
3825 5' -65.6 NC_001650.1 + 25863 0.67 0.428877
Target:  5'- cGCGCugaCCCCgGCC-GCCGAGGgGGg- -3'
miRNA:   3'- uCGCG---GGGGaCGGcCGGCUCCgCUau -5'
3825 5' -65.6 NC_001650.1 + 26816 0.67 0.454355
Target:  5'- cGCGCCCCUUcgaGuuGGCCGAccuggGGCa--- -3'
miRNA:   3'- uCGCGGGGGA---CggCCGGCU-----CCGcuau -5'
3825 5' -65.6 NC_001650.1 + 27890 0.69 0.343163
Target:  5'- aGGCaCCCCCUGCCccccGUCGAGGCc--- -3'
miRNA:   3'- -UCGcGGGGGACGGc---CGGCUCCGcuau -5'
3825 5' -65.6 NC_001650.1 + 28121 0.67 0.463029
Target:  5'- aGGUGCCCCUggGCaaccuGGCCGGGGUc--- -3'
miRNA:   3'- -UCGCGGGGGa-CGg----CCGGCUCCGcuau -5'
3825 5' -65.6 NC_001650.1 + 28779 0.67 0.44577
Target:  5'- cGGUGCCgCC-GCCGGagGGGGCGGg- -3'
miRNA:   3'- -UCGCGGgGGaCGGCCggCUCCGCUau -5'
3825 5' -65.6 NC_001650.1 + 30522 0.66 0.471789
Target:  5'- uGCGCgUCCUGCUucGCgGAGGCGGc- -3'
miRNA:   3'- uCGCGgGGGACGGc-CGgCUCCGCUau -5'
3825 5' -65.6 NC_001650.1 + 41173 0.66 0.51677
Target:  5'- cGGCGCCCUCcGCgUGGCCc--GCGAUAc -3'
miRNA:   3'- -UCGCGGGGGaCG-GCCGGcucCGCUAU- -5'
3825 5' -65.6 NC_001650.1 + 41321 0.72 0.225814
Target:  5'- gAGCGCgCCggCUGCacgGGCCGGGGCGGc- -3'
miRNA:   3'- -UCGCGgGG--GACGg--CCGGCUCCGCUau -5'
3825 5' -65.6 NC_001650.1 + 41590 0.7 0.295391
Target:  5'- cGCaGCCCCCUccGCCGGCCugcugcuuGAcGGCGGg- -3'
miRNA:   3'- uCG-CGGGGGA--CGGCCGG--------CU-CCGCUau -5'
3825 5' -65.6 NC_001650.1 + 42955 0.71 0.25239
Target:  5'- cGCGCCCgCUcGCCgccgcggGGCCGAgGGCGAa- -3'
miRNA:   3'- uCGCGGGgGA-CGG-------CCGGCU-CCGCUau -5'
3825 5' -65.6 NC_001650.1 + 49177 0.66 0.480633
Target:  5'- uGGUGUCCgagggCCgcgcGCUGGCCGAgGGCGAg- -3'
miRNA:   3'- -UCGCGGG-----GGa---CGGCCGGCU-CCGCUau -5'
3825 5' -65.6 NC_001650.1 + 50305 0.67 0.437276
Target:  5'- gGGCGCCCCCaGCUGuacucugggcGCCGcggucccagGGGCGGc- -3'
miRNA:   3'- -UCGCGGGGGaCGGC----------CGGC---------UCCGCUau -5'
3825 5' -65.6 NC_001650.1 + 50640 0.67 0.454355
Target:  5'- uGCGCCCCCUcgagggGCCGGUgcccgCGGGGgGc-- -3'
miRNA:   3'- uCGCGGGGGA------CGGCCG-----GCUCCgCuau -5'
3825 5' -65.6 NC_001650.1 + 51020 0.67 0.460418
Target:  5'- cGGCgGCCCCCUcucagaucaagGUgGGCgugacccuggugcgCGAGGCGAUGc -3'
miRNA:   3'- -UCG-CGGGGGA-----------CGgCCG--------------GCUCCGCUAU- -5'
3825 5' -65.6 NC_001650.1 + 51103 0.67 0.428877
Target:  5'- --aGCCCCUggUGCUgGGCCGAGGCc--- -3'
miRNA:   3'- ucgCGGGGG--ACGG-CCGGCUCCGcuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.