miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3825 5' -65.6 NC_001650.1 + 132150 0.68 0.380554
Target:  5'- uGgGCCCCaccgagGCCGG-CGGGGCGGa- -3'
miRNA:   3'- uCgCGGGGga----CGGCCgGCUCCGCUau -5'
3825 5' -65.6 NC_001650.1 + 142615 0.7 0.294106
Target:  5'- cGCGCCCgCCgucaagcagcagGCCGGCgGAGGgGGc- -3'
miRNA:   3'- uCGCGGG-GGa-----------CGGCCGgCUCCgCUau -5'
3825 5' -65.6 NC_001650.1 + 88742 0.69 0.315207
Target:  5'- --aGCCCCCgGCCGGCaagCGGGGCa--- -3'
miRNA:   3'- ucgCGGGGGaCGGCCG---GCUCCGcuau -5'
3825 5' -65.6 NC_001650.1 + 57351 0.69 0.328965
Target:  5'- uGGCGCCgCCUGgUGGCCGuuGUGGg- -3'
miRNA:   3'- -UCGCGGgGGACgGCCGGCucCGCUau -5'
3825 5' -65.6 NC_001650.1 + 21289 0.69 0.343163
Target:  5'- uGCucaucuCCCCCUGCCuGCCGAGGUaGAg- -3'
miRNA:   3'- uCGc-----GGGGGACGGcCGGCUCCG-CUau -5'
3825 5' -65.6 NC_001650.1 + 96240 0.69 0.349694
Target:  5'- gGGCGCCCCCgggucGCUGGUCauccuggGuGGCGAc- -3'
miRNA:   3'- -UCGCGGGGGa----CGGCCGG-------CuCCGCUau -5'
3825 5' -65.6 NC_001650.1 + 74848 0.69 0.350425
Target:  5'- uGGCaGgCUCCUGCCGGCCaucauGAGGCa--- -3'
miRNA:   3'- -UCG-CgGGGGACGGCCGG-----CUCCGcuau -5'
3825 5' -65.6 NC_001650.1 + 142683 0.69 0.350425
Target:  5'- -cCGCCgCCgcGCCGGCCGAuaagcGGCGAg- -3'
miRNA:   3'- ucGCGGgGGa-CGGCCGGCU-----CCGCUau -5'
3825 5' -65.6 NC_001650.1 + 123977 0.68 0.365275
Target:  5'- gGGCGUUCCUguacuuugUGCCcGCCGAGGUGGa- -3'
miRNA:   3'- -UCGCGGGGG--------ACGGcCGGCUCCGCUau -5'
3825 5' -65.6 NC_001650.1 + 145945 0.71 0.258699
Target:  5'- uGUGCCCCagcCCGGCCcGGGCGAg- -3'
miRNA:   3'- uCGCGGGGgacGGCCGGcUCCGCUau -5'
3825 5' -65.6 NC_001650.1 + 110673 0.71 0.247322
Target:  5'- cGCGCCCCCucgggcgaUGCCGGaCCGGGacccaGCGGg- -3'
miRNA:   3'- uCGCGGGGG--------ACGGCC-GGCUC-----CGCUau -5'
3825 5' -65.6 NC_001650.1 + 90095 0.73 0.196544
Target:  5'- aGGCGCCgUgUGCUGGCaCGAGGCGc-- -3'
miRNA:   3'- -UCGCGGgGgACGGCCG-GCUCCGCuau -5'
3825 5' -65.6 NC_001650.1 + 166996 1.06 0.000758
Target:  5'- cAGCGCCCCCUGCCGGCCGAGGCGAUAg -3'
miRNA:   3'- -UCGCGGGGGACGGCCGGCUCCGCUAU- -5'
3825 5' -65.6 NC_001650.1 + 90190 0.77 0.095153
Target:  5'- uGGCGCCCCCUGgCGGCgGuGGgGAa- -3'
miRNA:   3'- -UCGCGGGGGACgGCCGgCuCCgCUau -5'
3825 5' -65.6 NC_001650.1 + 131809 0.74 0.158868
Target:  5'- cAGgGCCuUCCUGUucaGGCCGGGGCGGUGg -3'
miRNA:   3'- -UCgCGG-GGGACGg--CCGGCUCCGCUAU- -5'
3825 5' -65.6 NC_001650.1 + 158351 0.74 0.162709
Target:  5'- aGGCGCCCCCcucGgCGGCCGGGGUc--- -3'
miRNA:   3'- -UCGCGGGGGa--CgGCCGGCUCCGcuau -5'
3825 5' -65.6 NC_001650.1 + 21771 0.73 0.183188
Target:  5'- cGGCGCCCCCUggugggggacGCCggggagggcgccGGCCGAGGCc--- -3'
miRNA:   3'- -UCGCGGGGGA----------CGG------------CCGGCUCCGcuau -5'
3825 5' -65.6 NC_001650.1 + 60617 0.73 0.187549
Target:  5'- gGGCGUaggcgCCCUGCCGGuuGAGGgGGg- -3'
miRNA:   3'- -UCGCGg----GGGACGGCCggCUCCgCUau -5'
3825 5' -65.6 NC_001650.1 + 129852 0.73 0.189318
Target:  5'- gAGCuuCCCCCUGCCcaagcucaaccggcaGGCCGAGGCcGUGg -3'
miRNA:   3'- -UCGc-GGGGGACGG---------------CCGGCUCCGcUAU- -5'
3825 5' -65.6 NC_001650.1 + 75312 0.73 0.196544
Target:  5'- cAGCGcCCCCCUG-CGGCCGcGGaCGAg- -3'
miRNA:   3'- -UCGC-GGGGGACgGCCGGCuCC-GCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.