miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3828 3' -56.5 NC_001650.1 + 2736 1.13 0.001753
Target:  5'- aGCCCACCCCUCUAGGCCUCUAUUGGCc -3'
miRNA:   3'- -CGGGUGGGGAGAUCCGGAGAUAACCG- -5'
3828 3' -56.5 NC_001650.1 + 169443 1.13 0.001753
Target:  5'- aGCCCACCCCUCUAGGCCUCUAUUGGCc -3'
miRNA:   3'- -CGGGUGGGGAGAUCCGGAGAUAACCG- -5'
3828 3' -56.5 NC_001650.1 + 22446 0.8 0.257708
Target:  5'- cGCCCACCCUcCUGGGCUUCgugagGGUg -3'
miRNA:   3'- -CGGGUGGGGaGAUCCGGAGauaa-CCG- -5'
3828 3' -56.5 NC_001650.1 + 2891 0.79 0.289559
Target:  5'- uGCCCACCCC-CUAGcCCaccCUAUUGGCc -3'
miRNA:   3'- -CGGGUGGGGaGAUCcGGa--GAUAACCG- -5'
3828 3' -56.5 NC_001650.1 + 169598 0.79 0.289559
Target:  5'- uGCCCACCCC-CUAGcCCaccCUAUUGGCc -3'
miRNA:   3'- -CGGGUGGGGaGAUCcGGa--GAUAACCG- -5'
3828 3' -56.5 NC_001650.1 + 54304 0.78 0.296289
Target:  5'- cGUCCGcCCCCUCUAuGGCCugcUCUAUcUGGCu -3'
miRNA:   3'- -CGGGU-GGGGAGAU-CCGG---AGAUA-ACCG- -5'
3828 3' -56.5 NC_001650.1 + 167783 0.77 0.34679
Target:  5'- gGCCCACCCC-C-GGGCCcCcAUUGGCu -3'
miRNA:   3'- -CGGGUGGGGaGaUCCGGaGaUAACCG- -5'
3828 3' -56.5 NC_001650.1 + 162412 0.77 0.34679
Target:  5'- cGCCUcCCCCUCcccgGGGCCUCggccGGCg -3'
miRNA:   3'- -CGGGuGGGGAGa---UCCGGAGauaaCCG- -5'
3828 3' -56.5 NC_001650.1 + 1076 0.77 0.34679
Target:  5'- gGCCCACCCC-C-GGGCCcCcAUUGGCu -3'
miRNA:   3'- -CGGGUGGGGaGaUCCGGaGaUAACCG- -5'
3828 3' -56.5 NC_001650.1 + 126486 0.76 0.4203
Target:  5'- cGCCCACCCCgcgAGGCCg-----GGCa -3'
miRNA:   3'- -CGGGUGGGGagaUCCGGagauaaCCG- -5'
3828 3' -56.5 NC_001650.1 + 29760 0.75 0.429033
Target:  5'- gGCCgCGCCCCaguacUCUGGGuCCUCguccgUGGCu -3'
miRNA:   3'- -CGG-GUGGGG-----AGAUCC-GGAGaua--ACCG- -5'
3828 3' -56.5 NC_001650.1 + 130978 0.75 0.453134
Target:  5'- gGCCCgucuucgaggcggcGCCCCUgUcgcGGGcCCUCUAUUGGUc -3'
miRNA:   3'- -CGGG--------------UGGGGAgA---UCC-GGAGAUAACCG- -5'
3828 3' -56.5 NC_001650.1 + 55904 0.74 0.499614
Target:  5'- cGCCCACCgCCUCcgcgaAGGCC-CUGUccuugacccccggcUGGCu -3'
miRNA:   3'- -CGGGUGG-GGAGa----UCCGGaGAUA--------------ACCG- -5'
3828 3' -56.5 NC_001650.1 + 134575 0.74 0.512047
Target:  5'- gGCCCACCCC-C-AGGCCUggUUGUagaggGGCg -3'
miRNA:   3'- -CGGGUGGGGaGaUCCGGA--GAUAa----CCG- -5'
3828 3' -56.5 NC_001650.1 + 167968 0.74 0.521698
Target:  5'- uCCCGCCCC-CcGGGCCcCcAUUGGCu -3'
miRNA:   3'- cGGGUGGGGaGaUCCGGaGaUAACCG- -5'
3828 3' -56.5 NC_001650.1 + 1261 0.74 0.521698
Target:  5'- uCCCGCCCC-CcGGGCCcCcAUUGGCu -3'
miRNA:   3'- cGGGUGGGGaGaUCCGGaGaUAACCG- -5'
3828 3' -56.5 NC_001650.1 + 51765 0.72 0.598948
Target:  5'- cGCCCGCCCCUCUu--CCUCUcccccagccaGGCg -3'
miRNA:   3'- -CGGGUGGGGAGAuccGGAGAuaa-------CCG- -5'
3828 3' -56.5 NC_001650.1 + 169770 0.72 0.600961
Target:  5'- cGCCgGgCCCgg-AGGCCUCccAUUGGCu -3'
miRNA:   3'- -CGGgUgGGGagaUCCGGAGa-UAACCG- -5'
3828 3' -56.5 NC_001650.1 + 3063 0.72 0.600961
Target:  5'- cGCCgGgCCCgg-AGGCCUCccAUUGGCu -3'
miRNA:   3'- -CGGgUgGGGagaUCCGGAGa-UAACCG- -5'
3828 3' -56.5 NC_001650.1 + 169291 0.72 0.6383
Target:  5'- cGCCUACCucauaccccuaucuCCUCcccccGGCuCUCUAUUGGCc -3'
miRNA:   3'- -CGGGUGG--------------GGAGau---CCG-GAGAUAACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.