miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3828 3' -56.5 NC_001650.1 + 619 0.66 0.915313
Target:  5'- cGCCCuCCCC-C-GGGCCcCcAUUGGUc -3'
miRNA:   3'- -CGGGuGGGGaGaUCCGGaGaUAACCG- -5'
3828 3' -56.5 NC_001650.1 + 1076 0.77 0.34679
Target:  5'- gGCCCACCCC-C-GGGCCcCcAUUGGCu -3'
miRNA:   3'- -CGGGUGGGGaGaUCCGGaGaUAACCG- -5'
3828 3' -56.5 NC_001650.1 + 1261 0.74 0.521698
Target:  5'- uCCCGCCCC-CcGGGCCcCcAUUGGCu -3'
miRNA:   3'- cGGGUGGGGaGaUCCGGaGaUAACCG- -5'
3828 3' -56.5 NC_001650.1 + 2011 0.66 0.92633
Target:  5'- gGCCCACCCuCUCcccauuGGCCa-UGgaGGCc -3'
miRNA:   3'- -CGGGUGGG-GAGau----CCGGagAUaaCCG- -5'
3828 3' -56.5 NC_001650.1 + 2584 0.72 0.6383
Target:  5'- cGCCUACCucauaccccuaucuCCUCcccccGGCuCUCUAUUGGCc -3'
miRNA:   3'- -CGGGUGG--------------GGAGau---CCG-GAGAUAACCG- -5'
3828 3' -56.5 NC_001650.1 + 2736 1.13 0.001753
Target:  5'- aGCCCACCCCUCUAGGCCUCUAUUGGCc -3'
miRNA:   3'- -CGGGUGGGGAGAUCCGGAGAUAACCG- -5'
3828 3' -56.5 NC_001650.1 + 2891 0.79 0.289559
Target:  5'- uGCCCACCCC-CUAGcCCaccCUAUUGGCc -3'
miRNA:   3'- -CGGGUGGGGaGAUCcGGa--GAUAACCG- -5'
3828 3' -56.5 NC_001650.1 + 3063 0.72 0.600961
Target:  5'- cGCCgGgCCCgg-AGGCCUCccAUUGGCu -3'
miRNA:   3'- -CGGgUgGGGagaUCCGGAGa-UAACCG- -5'
3828 3' -56.5 NC_001650.1 + 4083 0.67 0.87678
Target:  5'- gGCCCugCCaggcaUGGGgUUCUcAUUGGCu -3'
miRNA:   3'- -CGGGugGGgag--AUCCgGAGA-UAACCG- -5'
3828 3' -56.5 NC_001650.1 + 5748 0.71 0.651424
Target:  5'- uGCCUagcaACCCC----GGCCUUUAUUGGCc -3'
miRNA:   3'- -CGGG----UGGGGagauCCGGAGAUAACCG- -5'
3828 3' -56.5 NC_001650.1 + 5831 0.67 0.890517
Target:  5'- gGCagGCCCC-CUAGGCCcCcAUUGGg -3'
miRNA:   3'- -CGggUGGGGaGAUCCGGaGaUAACCg -5'
3828 3' -56.5 NC_001650.1 + 5898 0.68 0.828157
Target:  5'- aGUCC-CCCCUCagUcugcccagcaaccaGGGCCUUcAUUGGCc -3'
miRNA:   3'- -CGGGuGGGGAG--A--------------UCCGGAGaUAACCG- -5'
3828 3' -56.5 NC_001650.1 + 6897 0.67 0.890517
Target:  5'- aGUCUGCCCagcaaccaGGGUCUUUAUUGGCc -3'
miRNA:   3'- -CGGGUGGGgaga----UCCGGAGAUAACCG- -5'
3828 3' -56.5 NC_001650.1 + 7234 0.69 0.796284
Target:  5'- uGCCCAgCaaCCg--GGGUCUUUAUUGGCc -3'
miRNA:   3'- -CGGGUgG--GGagaUCCGGAGAUAACCG- -5'
3828 3' -56.5 NC_001650.1 + 12725 0.72 0.64133
Target:  5'- gGCCUACCCCUCgagccccGGCCUggAUUuGCa -3'
miRNA:   3'- -CGGGUGGGGAGau-----CCGGAgaUAAcCG- -5'
3828 3' -56.5 NC_001650.1 + 13084 0.67 0.87678
Target:  5'- gGCCCGgCCCUCUGcGGUCgaggccGGCc -3'
miRNA:   3'- -CGGGUgGGGAGAU-CCGGagauaaCCG- -5'
3828 3' -56.5 NC_001650.1 + 13436 0.69 0.805111
Target:  5'- cCCCAUgCCUggCaGGGCCUCUccauauUUGGCa -3'
miRNA:   3'- cGGGUGgGGA--GaUCCGGAGAu-----AACCG- -5'
3828 3' -56.5 NC_001650.1 + 14760 0.67 0.883757
Target:  5'- cCCCaugACCCCUCU-GGCCaaUAgaGGCc -3'
miRNA:   3'- cGGG---UGGGGAGAuCCGGagAUaaCCG- -5'
3828 3' -56.5 NC_001650.1 + 16179 0.69 0.766179
Target:  5'- gGCCCACCCaCUuaaacaguagggggCUAGGCCaUUAagaUGGCc -3'
miRNA:   3'- -CGGGUGGG-GA--------------GAUCCGGaGAUa--ACCG- -5'
3828 3' -56.5 NC_001650.1 + 17448 0.68 0.830642
Target:  5'- uCCCggGCCCCUCUccucGGCCgccCUuugUGGCc -3'
miRNA:   3'- cGGG--UGGGGAGAu---CCGGa--GAua-ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.