Results 1 - 20 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3828 | 3' | -56.5 | NC_001650.1 | + | 57405 | 0.7 | 0.730937 |
Target: 5'- cCCCACCCC-CUGcGGCC-Cg---GGCg -3' miRNA: 3'- cGGGUGGGGaGAU-CCGGaGauaaCCG- -5' |
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3828 | 3' | -56.5 | NC_001650.1 | + | 169770 | 0.72 | 0.600961 |
Target: 5'- cGCCgGgCCCgg-AGGCCUCccAUUGGCu -3' miRNA: 3'- -CGGgUgGGGagaUCCGGAGa-UAACCG- -5' |
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3828 | 3' | -56.5 | NC_001650.1 | + | 2584 | 0.72 | 0.6383 |
Target: 5'- cGCCUACCucauaccccuaucuCCUCcccccGGCuCUCUAUUGGCc -3' miRNA: 3'- -CGGGUGG--------------GGAGau---CCG-GAGAUAACCG- -5' |
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3828 | 3' | -56.5 | NC_001650.1 | + | 169291 | 0.72 | 0.6383 |
Target: 5'- cGCCUACCucauaccccuaucuCCUCcccccGGCuCUCUAUUGGCc -3' miRNA: 3'- -CGGGUGG--------------GGAGau---CCG-GAGAUAACCG- -5' |
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3828 | 3' | -56.5 | NC_001650.1 | + | 5748 | 0.71 | 0.651424 |
Target: 5'- uGCCUagcaACCCC----GGCCUUUAUUGGCc -3' miRNA: 3'- -CGGG----UGGGGagauCCGGAGAUAACCG- -5' |
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3828 | 3' | -56.5 | NC_001650.1 | + | 172455 | 0.71 | 0.651424 |
Target: 5'- uGCCUagcaACCCC----GGCCUUUAUUGGCc -3' miRNA: 3'- -CGGG----UGGGGagauCCGGAGAUAACCG- -5' |
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3828 | 3' | -56.5 | NC_001650.1 | + | 89137 | 0.71 | 0.681582 |
Target: 5'- aCCCGCCCUUCUauAGGUCcCgccUGGCg -3' miRNA: 3'- cGGGUGGGGAGA--UCCGGaGauaACCG- -5' |
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3828 | 3' | -56.5 | NC_001650.1 | + | 56842 | 0.7 | 0.701504 |
Target: 5'- cGCCgggagACCCUUgCUGGGCCUacAUUGGCc -3' miRNA: 3'- -CGGg----UGGGGA-GAUCCGGAgaUAACCG- -5' |
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3828 | 3' | -56.5 | NC_001650.1 | + | 127775 | 0.7 | 0.721197 |
Target: 5'- gGCCCACCCCUCcaAGGCCaagaaccugCUGc-GGUu -3' miRNA: 3'- -CGGGUGGGGAGa-UCCGGa--------GAUaaCCG- -5' |
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3828 | 3' | -56.5 | NC_001650.1 | + | 3063 | 0.72 | 0.600961 |
Target: 5'- cGCCgGgCCCgg-AGGCCUCccAUUGGCu -3' miRNA: 3'- -CGGgUgGGGagaUCCGGAGa-UAACCG- -5' |
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3828 | 3' | -56.5 | NC_001650.1 | + | 167968 | 0.74 | 0.521698 |
Target: 5'- uCCCGCCCC-CcGGGCCcCcAUUGGCu -3' miRNA: 3'- cGGGUGGGGaGaUCCGGaGaUAACCG- -5' |
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3828 | 3' | -56.5 | NC_001650.1 | + | 1261 | 0.74 | 0.521698 |
Target: 5'- uCCCGCCCC-CcGGGCCcCcAUUGGCu -3' miRNA: 3'- cGGGUGGGGaGaUCCGGaGaUAACCG- -5' |
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3828 | 3' | -56.5 | NC_001650.1 | + | 169443 | 1.13 | 0.001753 |
Target: 5'- aGCCCACCCCUCUAGGCCUCUAUUGGCc -3' miRNA: 3'- -CGGGUGGGGAGAUCCGGAGAUAACCG- -5' |
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3828 | 3' | -56.5 | NC_001650.1 | + | 22446 | 0.8 | 0.257708 |
Target: 5'- cGCCCACCCUcCUGGGCUUCgugagGGUg -3' miRNA: 3'- -CGGGUGGGGaGAUCCGGAGauaa-CCG- -5' |
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3828 | 3' | -56.5 | NC_001650.1 | + | 2891 | 0.79 | 0.289559 |
Target: 5'- uGCCCACCCC-CUAGcCCaccCUAUUGGCc -3' miRNA: 3'- -CGGGUGGGGaGAUCcGGa--GAUAACCG- -5' |
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3828 | 3' | -56.5 | NC_001650.1 | + | 169598 | 0.79 | 0.289559 |
Target: 5'- uGCCCACCCC-CUAGcCCaccCUAUUGGCc -3' miRNA: 3'- -CGGGUGGGGaGAUCcGGa--GAUAACCG- -5' |
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3828 | 3' | -56.5 | NC_001650.1 | + | 1076 | 0.77 | 0.34679 |
Target: 5'- gGCCCACCCC-C-GGGCCcCcAUUGGCu -3' miRNA: 3'- -CGGGUGGGGaGaUCCGGaGaUAACCG- -5' |
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3828 | 3' | -56.5 | NC_001650.1 | + | 167783 | 0.77 | 0.34679 |
Target: 5'- gGCCCACCCC-C-GGGCCcCcAUUGGCu -3' miRNA: 3'- -CGGGUGGGGaGaUCCGGaGaUAACCG- -5' |
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3828 | 3' | -56.5 | NC_001650.1 | + | 29760 | 0.75 | 0.429033 |
Target: 5'- gGCCgCGCCCCaguacUCUGGGuCCUCguccgUGGCu -3' miRNA: 3'- -CGG-GUGGGG-----AGAUCC-GGAGaua--ACCG- -5' |
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3828 | 3' | -56.5 | NC_001650.1 | + | 130978 | 0.75 | 0.453134 |
Target: 5'- gGCCCgucuucgaggcggcGCCCCUgUcgcGGGcCCUCUAUUGGUc -3' miRNA: 3'- -CGGG--------------UGGGGAgA---UCC-GGAGAUAACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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