miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3861 3' -56.1 NC_001650.1 + 25046 1.13 0.00209
Target:  5'- aUGUUCUACGGGAGCGACGUGGCCAGCg -3'
miRNA:   3'- -ACAAGAUGCCCUCGCUGCACCGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 115765 0.76 0.418776
Target:  5'- cGUgUCUACucGGAcGCGGCGUGcGCCAGCg -3'
miRNA:   3'- aCA-AGAUGc-CCU-CGCUGCAC-CGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 111579 0.75 0.500554
Target:  5'- gUGUUC-ACGGG-GCaggugaggaagGAgGUGGCCAGCg -3'
miRNA:   3'- -ACAAGaUGCCCuCG-----------CUgCACCGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 121582 0.73 0.578643
Target:  5'- cUGgaCcGCGGGGGCGGCGgaGGgCAGCg -3'
miRNA:   3'- -ACaaGaUGCCCUCGCUGCa-CCgGUCG- -5'
3861 3' -56.1 NC_001650.1 + 83635 0.73 0.618755
Target:  5'- -uUUCUgggGCGGGugAGgGACGcGGCCGGCg -3'
miRNA:   3'- acAAGA---UGCCC--UCgCUGCaCCGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 33830 0.72 0.638898
Target:  5'- --aUCaAUGGGAGCGAacuguuUGcUGGCCAGCu -3'
miRNA:   3'- acaAGaUGCCCUCGCU------GC-ACCGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 20671 0.72 0.648966
Target:  5'- aGUUCUcaACGGGGGgGACGgggGGUCuGGUg -3'
miRNA:   3'- aCAAGA--UGCCCUCgCUGCa--CCGG-UCG- -5'
3861 3' -56.1 NC_001650.1 + 60189 0.72 0.679059
Target:  5'- cGgggUCUGCGG--GCGGCG-GGUCAGCa -3'
miRNA:   3'- aCa--AGAUGCCcuCGCUGCaCCGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 38378 0.71 0.689026
Target:  5'- ---aUUAcCGGGGGCagGGCGUGGaCCAGCu -3'
miRNA:   3'- acaaGAU-GCCCUCG--CUGCACC-GGUCG- -5'
3861 3' -56.1 NC_001650.1 + 73417 0.71 0.718619
Target:  5'- ------gUGGGGGCGGCccagGGCCAGCa -3'
miRNA:   3'- acaagauGCCCUCGCUGca--CCGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 50986 0.71 0.718619
Target:  5'- gUGUgcgagCUGCGGGGG-GACGggggcgcgGGCgCGGCg -3'
miRNA:   3'- -ACAa----GAUGCCCUCgCUGCa-------CCG-GUCG- -5'
3861 3' -56.1 NC_001650.1 + 69265 0.71 0.728351
Target:  5'- gGUUCUcuCGGuGGGCGA---GGCCAGCa -3'
miRNA:   3'- aCAAGAu-GCC-CUCGCUgcaCCGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 131819 0.7 0.738003
Target:  5'- cUGUUCagGCcGGGGCG--GUGGCCGGCc -3'
miRNA:   3'- -ACAAGa-UGcCCUCGCugCACCGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 122139 0.7 0.747566
Target:  5'- --cUCggggGCGGGGGCGGCGggagggGGagaCGGCg -3'
miRNA:   3'- acaAGa---UGCCCUCGCUGCa-----CCg--GUCG- -5'
3861 3' -56.1 NC_001650.1 + 95269 0.7 0.751364
Target:  5'- aGggCcgGCGGGAggcccucgaagucgcGCGugGUccuGGCCAGCa -3'
miRNA:   3'- aCaaGa-UGCCCU---------------CGCugCA---CCGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 1467 0.69 0.811271
Target:  5'- gGUgg-GCGGGuaAGCGG-GUGGCCAGg -3'
miRNA:   3'- aCAagaUGCCC--UCGCUgCACCGGUCg -5'
3861 3' -56.1 NC_001650.1 + 168174 0.69 0.811271
Target:  5'- gGUgg-GCGGGuaAGCGG-GUGGCCAGg -3'
miRNA:   3'- aCAagaUGCCC--UCGCUgCACCGGUCg -5'
3861 3' -56.1 NC_001650.1 + 111283 0.69 0.819808
Target:  5'- cGUacUCUGCcaugauggugGGGGGC-ACGUugaaGGCCAGCa -3'
miRNA:   3'- aCA--AGAUG----------CCCUCGcUGCA----CCGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 122038 0.69 0.819808
Target:  5'- cUGUUCgccuuCGaGGAcGCGGCGgGGCUGGCc -3'
miRNA:   3'- -ACAAGau---GC-CCU-CGCUGCaCCGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 27633 0.69 0.828179
Target:  5'- aGUUCUGCGccGAGCugGGCGUcGGCCuGGCc -3'
miRNA:   3'- aCAAGAUGCc-CUCG--CUGCA-CCGG-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.