miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3861 3' -56.1 NC_001650.1 + 1467 0.69 0.811271
Target:  5'- gGUgg-GCGGGuaAGCGG-GUGGCCAGg -3'
miRNA:   3'- aCAagaUGCCC--UCGCUgCACCGGUCg -5'
3861 3' -56.1 NC_001650.1 + 2755 0.66 0.929763
Target:  5'- -uUUCUggGCuGGGGUcGCGcGGCCAGCa -3'
miRNA:   3'- acAAGA--UGcCCUCGcUGCaCCGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 9192 0.68 0.844397
Target:  5'- gGggCUAUGGGGGUGuguGgGUGGUgGGCu -3'
miRNA:   3'- aCaaGAUGCCCUCGC---UgCACCGgUCG- -5'
3861 3' -56.1 NC_001650.1 + 20671 0.72 0.648966
Target:  5'- aGUUCUcaACGGGGGgGACGgggGGUCuGGUg -3'
miRNA:   3'- aCAAGA--UGCCCUCgCUGCa--CCGG-UCG- -5'
3861 3' -56.1 NC_001650.1 + 25046 1.13 0.00209
Target:  5'- aUGUUCUACGGGAGCGACGUGGCCAGCg -3'
miRNA:   3'- -ACAAGAUGCCCUCGCUGCACCGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 27633 0.69 0.828179
Target:  5'- aGUUCUGCGccGAGCugGGCGUcGGCCuGGCc -3'
miRNA:   3'- aCAAGAUGCc-CUCG--CUGCA-CCGG-UCG- -5'
3861 3' -56.1 NC_001650.1 + 27896 0.68 0.859868
Target:  5'- cGUggugACGGGGGUGGCGggGGCCu-- -3'
miRNA:   3'- aCAaga-UGCCCUCGCUGCa-CCGGucg -5'
3861 3' -56.1 NC_001650.1 + 28583 0.68 0.867308
Target:  5'- cGUUC-GCGGG-GCu-CGUGGUgAGCg -3'
miRNA:   3'- aCAAGaUGCCCuCGcuGCACCGgUCG- -5'
3861 3' -56.1 NC_001650.1 + 33830 0.72 0.638898
Target:  5'- --aUCaAUGGGAGCGAacuguuUGcUGGCCAGCu -3'
miRNA:   3'- acaAGaUGCCCUCGCU------GC-ACCGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 35277 0.66 0.934755
Target:  5'- gUGggCgggGCGGGccGGgGACGggcgcgGGCCAGg -3'
miRNA:   3'- -ACaaGa--UGCCC--UCgCUGCa-----CCGGUCg -5'
3861 3' -56.1 NC_001650.1 + 35886 0.67 0.894969
Target:  5'- aGUUUcACGcGGGGCgGGCGgacUGGCCGGg -3'
miRNA:   3'- aCAAGaUGC-CCUCG-CUGC---ACCGGUCg -5'
3861 3' -56.1 NC_001650.1 + 38378 0.71 0.689026
Target:  5'- ---aUUAcCGGGGGCagGGCGUGGaCCAGCu -3'
miRNA:   3'- acaaGAU-GCCCUCG--CUGCACC-GGUCG- -5'
3861 3' -56.1 NC_001650.1 + 48046 0.67 0.888378
Target:  5'- cUGUUCUGCucgcugcugGGGGGCGcccugaACGUGGgCAuguGCg -3'
miRNA:   3'- -ACAAGAUG---------CCCUCGC------UGCACCgGU---CG- -5'
3861 3' -56.1 NC_001650.1 + 50986 0.71 0.718619
Target:  5'- gUGUgcgagCUGCGGGGG-GACGggggcgcgGGCgCGGCg -3'
miRNA:   3'- -ACAa----GAUGCCCUCgCUGCa-------CCG-GUCG- -5'
3861 3' -56.1 NC_001650.1 + 53250 0.67 0.905663
Target:  5'- aGcgCgagACGGGAGCGGgGUcacggggaggucgaGGCCGGg -3'
miRNA:   3'- aCaaGa--UGCCCUCGCUgCA--------------CCGGUCg -5'
3861 3' -56.1 NC_001650.1 + 60189 0.72 0.679059
Target:  5'- cGgggUCUGCGG--GCGGCG-GGUCAGCa -3'
miRNA:   3'- aCa--AGAUGCCcuCGCUGCaCCGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 66885 0.68 0.844397
Target:  5'- -----gGCGGGGGCGAgcCGggGGCCGGg -3'
miRNA:   3'- acaagaUGCCCUCGCU--GCa-CCGGUCg -5'
3861 3' -56.1 NC_001650.1 + 67088 0.67 0.894969
Target:  5'- aGUaCcACGGGGGCGACGUcuCCAaGCu -3'
miRNA:   3'- aCAaGaUGCCCUCGCUGCAccGGU-CG- -5'
3861 3' -56.1 NC_001650.1 + 69265 0.71 0.728351
Target:  5'- gGUUCUcuCGGuGGGCGA---GGCCAGCa -3'
miRNA:   3'- aCAAGAu-GCC-CUCGCUgcaCCGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 70891 0.67 0.913398
Target:  5'- ---gCUACGcGAGCuACGUGGUCAGg -3'
miRNA:   3'- acaaGAUGCcCUCGcUGCACCGGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.