miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3861 3' -56.1 NC_001650.1 + 86231 0.66 0.929763
Target:  5'- aUGUUUga-GGaGGGCGACGaGGCCAc- -3'
miRNA:   3'- -ACAAGaugCC-CUCGCUGCaCCGGUcg -5'
3861 3' -56.1 NC_001650.1 + 48046 0.67 0.888378
Target:  5'- cUGUUCUGCucgcugcugGGGGGCGcccugaACGUGGgCAuguGCg -3'
miRNA:   3'- -ACAAGAUG---------CCCUCGC------UGCACCgGU---CG- -5'
3861 3' -56.1 NC_001650.1 + 35886 0.67 0.894969
Target:  5'- aGUUUcACGcGGGGCgGGCGgacUGGCCGGg -3'
miRNA:   3'- aCAAGaUGC-CCUCG-CUGC---ACCGGUCg -5'
3861 3' -56.1 NC_001650.1 + 53250 0.67 0.905663
Target:  5'- aGcgCgagACGGGAGCGGgGUcacggggaggucgaGGCCGGg -3'
miRNA:   3'- aCaaGa--UGCCCUCGCUgCA--------------CCGGUCg -5'
3861 3' -56.1 NC_001650.1 + 102224 0.67 0.907482
Target:  5'- aGUUCUuucaGGGAGCcgccucccaccaGACGgcgcaGCCGGCg -3'
miRNA:   3'- aCAAGAug--CCCUCG------------CUGCac---CGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 136094 0.67 0.911647
Target:  5'- -----gGCGGGGGCGGCcuuguccagccccagGGUCAGCa -3'
miRNA:   3'- acaagaUGCCCUCGCUGca-------------CCGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 78103 0.67 0.913398
Target:  5'- gUGUgcgACGGGGGCGACGaGuGCaUAGUg -3'
miRNA:   3'- -ACAagaUGCCCUCGCUGCaC-CG-GUCG- -5'
3861 3' -56.1 NC_001650.1 + 70891 0.67 0.913398
Target:  5'- ---gCUACGcGAGCuACGUGGUCAGg -3'
miRNA:   3'- acaaGAUGCcCUCGcUGCACCGGUCg -5'
3861 3' -56.1 NC_001650.1 + 127550 0.66 0.925072
Target:  5'- aGUUCgagggggaaggggcgAgGGGGGCGACcgcccagGGCCAGg -3'
miRNA:   3'- aCAAGa--------------UgCCCUCGCUGca-----CCGGUCg -5'
3861 3' -56.1 NC_001650.1 + 27896 0.68 0.859868
Target:  5'- cGUggugACGGGGGUGGCGggGGCCu-- -3'
miRNA:   3'- aCAaga-UGCCCUCGCUGCa-CCGGucg -5'
3861 3' -56.1 NC_001650.1 + 150967 0.68 0.852229
Target:  5'- gGUUCg--GGGGGUGGCGgUGG-CGGCg -3'
miRNA:   3'- aCAAGaugCCCUCGCUGC-ACCgGUCG- -5'
3861 3' -56.1 NC_001650.1 + 66885 0.68 0.844397
Target:  5'- -----gGCGGGGGCGAgcCGggGGCCGGg -3'
miRNA:   3'- acaagaUGCCCUCGCU--GCa-CCGGUCg -5'
3861 3' -56.1 NC_001650.1 + 121582 0.73 0.578643
Target:  5'- cUGgaCcGCGGGGGCGGCGgaGGgCAGCg -3'
miRNA:   3'- -ACaaGaUGCCCUCGCUGCa-CCgGUCG- -5'
3861 3' -56.1 NC_001650.1 + 33830 0.72 0.638898
Target:  5'- --aUCaAUGGGAGCGAacuguuUGcUGGCCAGCu -3'
miRNA:   3'- acaAGaUGCCCUCGCU------GC-ACCGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 60189 0.72 0.679059
Target:  5'- cGgggUCUGCGG--GCGGCG-GGUCAGCa -3'
miRNA:   3'- aCa--AGAUGCCcuCGCUGCaCCGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 50986 0.71 0.718619
Target:  5'- gUGUgcgagCUGCGGGGG-GACGggggcgcgGGCgCGGCg -3'
miRNA:   3'- -ACAa----GAUGCCCUCgCUGCa-------CCG-GUCG- -5'
3861 3' -56.1 NC_001650.1 + 73417 0.71 0.718619
Target:  5'- ------gUGGGGGCGGCccagGGCCAGCa -3'
miRNA:   3'- acaagauGCCCUCGCUGca--CCGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 131819 0.7 0.738003
Target:  5'- cUGUUCagGCcGGGGCG--GUGGCCGGCc -3'
miRNA:   3'- -ACAAGa-UGcCCUCGCugCACCGGUCG- -5'
3861 3' -56.1 NC_001650.1 + 122139 0.7 0.747566
Target:  5'- --cUCggggGCGGGGGCGGCGggagggGGagaCGGCg -3'
miRNA:   3'- acaAGa---UGCCCUCGCUGCa-----CCg--GUCG- -5'
3861 3' -56.1 NC_001650.1 + 122038 0.69 0.819808
Target:  5'- cUGUUCgccuuCGaGGAcGCGGCGgGGCUGGCc -3'
miRNA:   3'- -ACAAGau---GC-CCU-CGCUGCaCCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.