miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
387 3' -59.5 AC_000011.1 + 15825 0.66 0.425707
Target:  5'- gCgaUGCGCcgccgCCGGCUCUugGCGCGGg -3'
miRNA:   3'- gGgaGCGCGa----GGUUGGGGugCGUGCU- -5'
387 3' -59.5 AC_000011.1 + 13031 0.66 0.425707
Target:  5'- cCCCagcgcCGCGCU-CGACaugaCCGCGCGCa- -3'
miRNA:   3'- -GGGa----GCGCGAgGUUGg---GGUGCGUGcu -5'
387 3' -59.5 AC_000011.1 + 17068 0.66 0.416317
Target:  5'- gCCgcggcCGCGCaccUCUGACCCUgccGCGCGCGc -3'
miRNA:   3'- gGGa----GCGCG---AGGUUGGGG---UGCGUGCu -5'
387 3' -59.5 AC_000011.1 + 16495 0.66 0.416317
Target:  5'- aUCC-CGCuGgaCCAcggcaACCCCACGC-CGAg -3'
miRNA:   3'- -GGGaGCG-CgaGGU-----UGGGGUGCGuGCU- -5'
387 3' -59.5 AC_000011.1 + 20929 0.66 0.413525
Target:  5'- gCCCaCGCGCUagaCAugaauuucgaagucACCCCAUGgAUGAg -3'
miRNA:   3'- -GGGaGCGCGAg--GU--------------UGGGGUGCgUGCU- -5'
387 3' -59.5 AC_000011.1 + 6633 0.66 0.407054
Target:  5'- gCCUcCGCGCUuacccaucCCAugCCCugGgGCa- -3'
miRNA:   3'- gGGA-GCGCGA--------GGUugGGGugCgUGcu -5'
387 3' -59.5 AC_000011.1 + 20729 0.66 0.407054
Target:  5'- aCCUCGCGC-CCA---CCAUGCGCc- -3'
miRNA:   3'- gGGAGCGCGaGGUuggGGUGCGUGcu -5'
387 3' -59.5 AC_000011.1 + 3762 0.66 0.397922
Target:  5'- gCCg-GCGC-CCAugGCCauuCCGCGCACGGc -3'
miRNA:   3'- gGGagCGCGaGGU--UGG---GGUGCGUGCU- -5'
387 3' -59.5 AC_000011.1 + 11108 0.66 0.397922
Target:  5'- gCCCgaggagaugCGCGCggcCCggUUCCACGCGgGGc -3'
miRNA:   3'- -GGGa--------GCGCGa--GGuuGGGGUGCGUgCU- -5'
387 3' -59.5 AC_000011.1 + 4047 0.66 0.388922
Target:  5'- aCCg-GUGgUCCAggGCCuaCCGCGCGCGAa -3'
miRNA:   3'- gGGagCGCgAGGU--UGG--GGUGCGUGCU- -5'
387 3' -59.5 AC_000011.1 + 20023 0.66 0.388922
Target:  5'- uCCCUCG-GCaaCGA-CCUGCGCACGGa -3'
miRNA:   3'- -GGGAGCgCGagGUUgGGGUGCGUGCU- -5'
387 3' -59.5 AC_000011.1 + 5013 0.66 0.388029
Target:  5'- gCCUCGCuccaggaGCUCCuAUCCCugGgGgGAg -3'
miRNA:   3'- gGGAGCG-------CGAGGuUGGGGugCgUgCU- -5'
387 3' -59.5 AC_000011.1 + 16024 0.66 0.380056
Target:  5'- gCCCgUGCGCaCCcGCCCCccuCGCACu- -3'
miRNA:   3'- -GGGaGCGCGaGGuUGGGGu--GCGUGcu -5'
387 3' -59.5 AC_000011.1 + 11198 0.67 0.354283
Target:  5'- gCCgcgcCGCaGCUCCcGCCCCGCGUG-GAa -3'
miRNA:   3'- gGGa---GCG-CGAGGuUGGGGUGCGUgCU- -5'
387 3' -59.5 AC_000011.1 + 22084 0.67 0.354283
Target:  5'- aCCC-CGUGUaCCGcaACuCCCGCGCGCa- -3'
miRNA:   3'- -GGGaGCGCGaGGU--UG-GGGUGCGUGcu -5'
387 3' -59.5 AC_000011.1 + 15655 0.67 0.353445
Target:  5'- gCCCUUgaggGCGCcCCagggagcgcggaaGugCCCGCGCACGc -3'
miRNA:   3'- -GGGAG----CGCGaGG-------------UugGGGUGCGUGCu -5'
387 3' -59.5 AC_000011.1 + 15895 0.67 0.337799
Target:  5'- uCCCgUGCGC-CUGGCCCUGCGCAg-- -3'
miRNA:   3'- -GGGaGCGCGaGGUUGGGGUGCGUgcu -5'
387 3' -59.5 AC_000011.1 + 8264 0.67 0.337799
Target:  5'- aCCCUgGacaGCUCCGGCC-UGCGCGCc- -3'
miRNA:   3'- -GGGAgCg--CGAGGUUGGgGUGCGUGcu -5'
387 3' -59.5 AC_000011.1 + 24681 0.67 0.337799
Target:  5'- --gUCGCGCcgggCCu-CCCCGCGCAgGGu -3'
miRNA:   3'- gggAGCGCGa---GGuuGGGGUGCGUgCU- -5'
387 3' -59.5 AC_000011.1 + 16902 0.68 0.321879
Target:  5'- gCCCaacuaCGCGCugcauccuUCCAucauCCCCACGC-CGGg -3'
miRNA:   3'- -GGGa----GCGCG--------AGGUu---GGGGUGCGuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.