Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
390 | 5' | -54.5 | AC_000011.1 | + | 835 | 0.66 | 0.561736 |
Target: 5'- aGCAGC-GCGGCAUCGcuaaaaaaaucauuuACCGCcucCUCa -3' miRNA: 3'- cUGUCGcCGUCGUAGU---------------UGGCGuu-GAG- -5' |
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390 | 5' | -54.5 | AC_000011.1 | + | 3673 | 0.67 | 0.5013 |
Target: 5'- cGCAGCuGCuGCAUCuGCCGcCAGCg- -3' miRNA: 3'- cUGUCGcCGuCGUAGuUGGC-GUUGag -5' |
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390 | 5' | -54.5 | AC_000011.1 | + | 3727 | 0.73 | 0.243277 |
Target: 5'- cGGCAGauGCAGCAgcugCGGCgGCAGCUg -3' miRNA: 3'- -CUGUCgcCGUCGUa---GUUGgCGUUGAg -5' |
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390 | 5' | -54.5 | AC_000011.1 | + | 8256 | 0.66 | 0.580055 |
Target: 5'- gGGCAGCGGCGGCgcgcgGUUGACUuGCAGg-- -3' miRNA: 3'- -CUGUCGCCGUCG-----UAGUUGG-CGUUgag -5' |
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390 | 5' | -54.5 | AC_000011.1 | + | 8504 | 0.67 | 0.544708 |
Target: 5'- aGGCAGgGGCGGCAggggCAcgucggcGCCGCGcGCg- -3' miRNA: 3'- -CUGUCgCCGUCGUa---GU-------UGGCGU-UGag -5' |
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390 | 5' | -54.5 | AC_000011.1 | + | 9470 | 0.7 | 0.379061 |
Target: 5'- aGAUGcGCGGCGGCGUCuucacGCUGCGGCc- -3' miRNA: 3'- -CUGU-CGCCGUCGUAGu----UGGCGUUGag -5' |
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390 | 5' | -54.5 | AC_000011.1 | + | 10149 | 0.66 | 0.568589 |
Target: 5'- cGGCGGCuGGCGGUAgagCGGCCaucGCUCg -3' miRNA: 3'- -CUGUCG-CCGUCGUa--GUUGGcguUGAG- -5' |
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390 | 5' | -54.5 | AC_000011.1 | + | 10259 | 0.66 | 0.580055 |
Target: 5'- cGGCGGCGGUGGUggaGGCgCGCGggaACUCg -3' miRNA: 3'- -CUGUCGCCGUCGuagUUG-GCGU---UGAG- -5' |
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390 | 5' | -54.5 | AC_000011.1 | + | 10771 | 0.66 | 0.580055 |
Target: 5'- cGACGG-GGCAGCcacgcccucGUUAGCCGCGGaauccggccggcCUCg -3' miRNA: 3'- -CUGUCgCCGUCG---------UAGUUGGCGUU------------GAG- -5' |
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390 | 5' | -54.5 | AC_000011.1 | + | 10973 | 0.66 | 0.568589 |
Target: 5'- cACGGCGGCcGCggCggUCGUGGCUg -3' miRNA: 3'- cUGUCGCCGuCGuaGuuGGCGUUGAg -5' |
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390 | 5' | -54.5 | AC_000011.1 | + | 11611 | 0.72 | 0.278464 |
Target: 5'- gGACAGCGGCAGC-----CCGC-GCUCc -3' miRNA: 3'- -CUGUCGCCGUCGuaguuGGCGuUGAG- -5' |
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390 | 5' | -54.5 | AC_000011.1 | + | 12744 | 1.1 | 0.000462 |
Target: 5'- gGACAGCGGCAGCAUCAACCGCAACUCg -3' miRNA: 3'- -CUGUCGCCGUCGUAGUUGGCGUUGAG- -5' |
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390 | 5' | -54.5 | AC_000011.1 | + | 13432 | 0.66 | 0.614701 |
Target: 5'- gGACuGGCGGCcucgGGCA-CcGCCGCGGCa- -3' miRNA: 3'- -CUG-UCGCCG----UCGUaGuUGGCGUUGag -5' |
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390 | 5' | -54.5 | AC_000011.1 | + | 13935 | 0.73 | 0.250006 |
Target: 5'- uGGCGGCGGCGGCGaugCAGCCcccGCuggaGGCUCc -3' miRNA: 3'- -CUGUCGCCGUCGUa--GUUGG---CG----UUGAG- -5' |
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390 | 5' | -54.5 | AC_000011.1 | + | 13997 | 0.68 | 0.458432 |
Target: 5'- aGCGGgGGCuGCAUCGccGCCGCcGCcaUCg -3' miRNA: 3'- cUGUCgCCGuCGUAGU--UGGCGuUG--AG- -5' |
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390 | 5' | -54.5 | AC_000011.1 | + | 14775 | 0.67 | 0.5013 |
Target: 5'- uGCAGCaGCugaAGCAacugCAGCCGUAGCUa -3' miRNA: 3'- cUGUCGcCG---UCGUa---GUUGGCGUUGAg -5' |
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390 | 5' | -54.5 | AC_000011.1 | + | 14850 | 0.68 | 0.49041 |
Target: 5'- aGCAGUGGCAGCG---GCCgagGCGGCUg -3' miRNA: 3'- cUGUCGCCGUCGUaguUGG---CGUUGAg -5' |
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390 | 5' | -54.5 | AC_000011.1 | + | 15388 | 0.67 | 0.523387 |
Target: 5'- cGCAGCGGCAGgGUC--CCGUGAUc- -3' miRNA: 3'- cUGUCGCCGUCgUAGuuGGCGUUGag -5' |
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390 | 5' | -54.5 | AC_000011.1 | + | 15680 | 0.66 | 0.55718 |
Target: 5'- cGACGGUGGU-GCG-CGACCGCAcGCg- -3' miRNA: 3'- -CUGUCGCCGuCGUaGUUGGCGU-UGag -5' |
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390 | 5' | -54.5 | AC_000011.1 | + | 15774 | 0.73 | 0.250006 |
Target: 5'- cGGCGGCGGC-GCAUCGcCCgGCGGCa- -3' miRNA: 3'- -CUGUCGCCGuCGUAGUuGG-CGUUGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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