miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
390 5' -54.5 AC_000011.1 + 15937 0.76 0.141956
Target:  5'- cGGCGGCGGCAGCGgcCAucGCCaGCAugUCc -3'
miRNA:   3'- -CUGUCGCCGUCGUa-GU--UGG-CGUugAG- -5'
390 5' -54.5 AC_000011.1 + 16286 0.68 0.458432
Target:  5'- uGCAGUGGCgcgGGCGgaaggugCAACCGguGCUg -3'
miRNA:   3'- cUGUCGCCG---UCGUa------GUUGGCguUGAg -5'
390 5' -54.5 AC_000011.1 + 16544 0.68 0.479632
Target:  5'- uGCAGCaGguGCugcCGACCGCGGCg- -3'
miRNA:   3'- cUGUCGcCguCGua-GUUGGCGUUGag -5'
390 5' -54.5 AC_000011.1 + 16601 0.66 0.614701
Target:  5'- cGCGGuCGGCAGCAcCuGCUGCAAg-- -3'
miRNA:   3'- cUGUC-GCCGUCGUaGuUGGCGUUgag -5'
390 5' -54.5 AC_000011.1 + 17053 0.74 0.187175
Target:  5'- cGACGGCGGCGGCGagugguggucuugCGGCgGCGGCUg -3'
miRNA:   3'- -CUGUCGCCGUCGUa------------GUUGgCGUUGAg -5'
390 5' -54.5 AC_000011.1 + 17138 0.71 0.293635
Target:  5'- cGCGcGCGGCAGgGUCAgaggugcgcgGCCGCGGCg- -3'
miRNA:   3'- cUGU-CGCCGUCgUAGU----------UGGCGUUGag -5'
390 5' -54.5 AC_000011.1 + 17758 0.69 0.407742
Target:  5'- uGCAGCGGCAG-AUCAacaGCCGCcugGACcCg -3'
miRNA:   3'- cUGUCGCCGUCgUAGU---UGGCG---UUGaG- -5'
390 5' -54.5 AC_000011.1 + 18221 0.72 0.263924
Target:  5'- aGCAGCGGCGGCGcuUCAcacuCUGC-ACUCc -3'
miRNA:   3'- cUGUCGCCGUCGU--AGUu---GGCGuUGAG- -5'
390 5' -54.5 AC_000011.1 + 18291 0.67 0.545838
Target:  5'- gGACAGCGGCGGCggCGACa-UAAUa- -3'
miRNA:   3'- -CUGUCGCCGUCGuaGUUGgcGUUGag -5'
390 5' -54.5 AC_000011.1 + 18361 0.73 0.23605
Target:  5'- cACuGgGGCAGCAUCGAUgggguggccaucuUGCAACUCg -3'
miRNA:   3'- cUGuCgCCGUCGUAGUUG-------------GCGUUGAG- -5'
390 5' -54.5 AC_000011.1 + 18535 0.72 0.278464
Target:  5'- --aAGC-GCAGCGUCAGCCGCuGGCUg -3'
miRNA:   3'- cugUCGcCGUCGUAGUUGGCG-UUGAg -5'
390 5' -54.5 AC_000011.1 + 25147 0.68 0.45217
Target:  5'- uGCAGCGGCAGUggCAcucgagcaggcccucGCCGCugacgucCUCg -3'
miRNA:   3'- cUGUCGCCGUCGuaGU---------------UGGCGuu-----GAG- -5'
390 5' -54.5 AC_000011.1 + 26021 0.66 0.603121
Target:  5'- aGGCAGCaGCAGCAgaaaaaGACCagcagaaaaccaGCAGCUa -3'
miRNA:   3'- -CUGUCGcCGUCGUag----UUGG------------CGUUGAg -5'
390 5' -54.5 AC_000011.1 + 26071 0.71 0.293635
Target:  5'- cACAGCGGCGGCAgCAgguggacugaggAUCGCGGCg- -3'
miRNA:   3'- cUGUCGCCGUCGUaGU------------UGGCGUUGag -5'
390 5' -54.5 AC_000011.1 + 27194 0.66 0.580055
Target:  5'- aGCGGCGGCAGUgguccagguGUCGaaGCCG-AGCUa -3'
miRNA:   3'- cUGUCGCCGUCG---------UAGU--UGGCgUUGAg -5'
390 5' -54.5 AC_000011.1 + 30474 0.71 0.309444
Target:  5'- aACAGaCGGCGGCAUgCAAUgGCAgaucacccuGCUCa -3'
miRNA:   3'- cUGUC-GCCGUCGUA-GUUGgCGU---------UGAG- -5'
390 5' -54.5 AC_000011.1 + 33871 0.76 0.137868
Target:  5'- aGCGGCGGCGGCAgCGACUGCuGCg- -3'
miRNA:   3'- cUGUCGCCGUCGUaGUUGGCGuUGag -5'
390 5' -54.5 AC_000011.1 + 34098 0.67 0.512294
Target:  5'- cGACGGCcacgugGGUAGCAUCcuucCCGCGAUg- -3'
miRNA:   3'- -CUGUCG------CCGUCGUAGuu--GGCGUUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.