miRNA display CGI


Results 21 - 38 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
390 5' -54.5 AC_000011.1 + 15680 0.66 0.55718
Target:  5'- cGACGGUGGU-GCG-CGACCGCAcGCg- -3'
miRNA:   3'- -CUGUCGCCGuCGUaGUUGGCGU-UGag -5'
390 5' -54.5 AC_000011.1 + 835 0.66 0.561736
Target:  5'- aGCAGC-GCGGCAUCGcuaaaaaaaucauuuACCGCcucCUCa -3'
miRNA:   3'- cUGUCGcCGUCGUAGU---------------UGGCGuu-GAG- -5'
390 5' -54.5 AC_000011.1 + 10973 0.66 0.568589
Target:  5'- cACGGCGGCcGCggCggUCGUGGCUg -3'
miRNA:   3'- cUGUCGCCGuCGuaGuuGGCGUUGAg -5'
390 5' -54.5 AC_000011.1 + 27194 0.66 0.580055
Target:  5'- aGCGGCGGCAGUgguccagguGUCGaaGCCG-AGCUa -3'
miRNA:   3'- cUGUCGCCGUCG---------UAGU--UGGCgUUGAg -5'
390 5' -54.5 AC_000011.1 + 10771 0.66 0.580055
Target:  5'- cGACGG-GGCAGCcacgcccucGUUAGCCGCGGaauccggccggcCUCg -3'
miRNA:   3'- -CUGUCgCCGUCG---------UAGUUGGCGUU------------GAG- -5'
390 5' -54.5 AC_000011.1 + 16601 0.66 0.614701
Target:  5'- cGCGGuCGGCAGCAcCuGCUGCAAg-- -3'
miRNA:   3'- cUGUC-GCCGUCGUaGuUGGCGUUgag -5'
390 5' -54.5 AC_000011.1 + 13997 0.68 0.458432
Target:  5'- aGCGGgGGCuGCAUCGccGCCGCcGCcaUCg -3'
miRNA:   3'- cUGUCgCCGuCGUAGU--UGGCGuUG--AG- -5'
390 5' -54.5 AC_000011.1 + 25147 0.68 0.45217
Target:  5'- uGCAGCGGCAGUggCAcucgagcaggcccucGCCGCugacgucCUCg -3'
miRNA:   3'- cUGUCGCCGUCGuaGU---------------UGGCGuu-----GAG- -5'
390 5' -54.5 AC_000011.1 + 33871 0.76 0.137868
Target:  5'- aGCGGCGGCGGCAgCGACUGCuGCg- -3'
miRNA:   3'- cUGUCGCCGUCGUaGUUGGCGuUGag -5'
390 5' -54.5 AC_000011.1 + 17053 0.74 0.187175
Target:  5'- cGACGGCGGCGGCGagugguggucuugCGGCgGCGGCUg -3'
miRNA:   3'- -CUGUCGCCGUCGUa------------GUUGgCGUUGAg -5'
390 5' -54.5 AC_000011.1 + 18361 0.73 0.23605
Target:  5'- cACuGgGGCAGCAUCGAUgggguggccaucuUGCAACUCg -3'
miRNA:   3'- cUGuCgCCGUCGUAGUUG-------------GCGUUGAG- -5'
390 5' -54.5 AC_000011.1 + 3727 0.73 0.243277
Target:  5'- cGGCAGauGCAGCAgcugCGGCgGCAGCUg -3'
miRNA:   3'- -CUGUCgcCGUCGUa---GUUGgCGUUGAg -5'
390 5' -54.5 AC_000011.1 + 18221 0.72 0.263924
Target:  5'- aGCAGCGGCGGCGcuUCAcacuCUGC-ACUCc -3'
miRNA:   3'- cUGUCGCCGUCGU--AGUu---GGCGuUGAG- -5'
390 5' -54.5 AC_000011.1 + 18535 0.72 0.278464
Target:  5'- --aAGC-GCAGCGUCAGCCGCuGGCUg -3'
miRNA:   3'- cugUCGcCGUCGUAGUUGGCG-UUGAg -5'
390 5' -54.5 AC_000011.1 + 11611 0.72 0.278464
Target:  5'- gGACAGCGGCAGC-----CCGC-GCUCc -3'
miRNA:   3'- -CUGUCGCCGUCGuaguuGGCGuUGAG- -5'
390 5' -54.5 AC_000011.1 + 17138 0.71 0.293635
Target:  5'- cGCGcGCGGCAGgGUCAgaggugcgcgGCCGCGGCg- -3'
miRNA:   3'- cUGU-CGCCGUCgUAGU----------UGGCGUUGag -5'
390 5' -54.5 AC_000011.1 + 9470 0.7 0.379061
Target:  5'- aGAUGcGCGGCGGCGUCuucacGCUGCGGCc- -3'
miRNA:   3'- -CUGU-CGCCGUCGUAGu----UGGCGUUGag -5'
390 5' -54.5 AC_000011.1 + 13432 0.66 0.614701
Target:  5'- gGACuGGCGGCcucgGGCA-CcGCCGCGGCa- -3'
miRNA:   3'- -CUG-UCGCCG----UCGUaGuUGGCGUUGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.