miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
390 5' -54.5 AC_000011.1 + 12744 1.1 0.000462
Target:  5'- gGACAGCGGCAGCAUCAACCGCAACUCg -3'
miRNA:   3'- -CUGUCGCCGUCGUAGUUGGCGUUGAG- -5'
390 5' -54.5 AC_000011.1 + 26021 0.66 0.603121
Target:  5'- aGGCAGCaGCAGCAgaaaaaGACCagcagaaaaccaGCAGCUa -3'
miRNA:   3'- -CUGUCGcCGUCGUag----UUGG------------CGUUGAg -5'
390 5' -54.5 AC_000011.1 + 10259 0.66 0.580055
Target:  5'- cGGCGGCGGUGGUggaGGCgCGCGggaACUCg -3'
miRNA:   3'- -CUGUCGCCGUCGuagUUG-GCGU---UGAG- -5'
390 5' -54.5 AC_000011.1 + 8256 0.66 0.580055
Target:  5'- gGGCAGCGGCGGCgcgcgGUUGACUuGCAGg-- -3'
miRNA:   3'- -CUGUCGCCGUCG-----UAGUUGG-CGUUgag -5'
390 5' -54.5 AC_000011.1 + 10149 0.66 0.568589
Target:  5'- cGGCGGCuGGCGGUAgagCGGCCaucGCUCg -3'
miRNA:   3'- -CUGUCG-CCGUCGUa--GUUGGcguUGAG- -5'
390 5' -54.5 AC_000011.1 + 8504 0.67 0.544708
Target:  5'- aGGCAGgGGCGGCAggggCAcgucggcGCCGCGcGCg- -3'
miRNA:   3'- -CUGUCgCCGUCGUa---GU-------UGGCGU-UGag -5'
390 5' -54.5 AC_000011.1 + 3673 0.67 0.5013
Target:  5'- cGCAGCuGCuGCAUCuGCCGcCAGCg- -3'
miRNA:   3'- cUGUCGcCGuCGUAGuUGGC-GUUGag -5'
390 5' -54.5 AC_000011.1 + 14775 0.67 0.5013
Target:  5'- uGCAGCaGCugaAGCAacugCAGCCGUAGCUa -3'
miRNA:   3'- cUGUCGcCG---UCGUa---GUUGGCGUUGAg -5'
390 5' -54.5 AC_000011.1 + 14850 0.68 0.49041
Target:  5'- aGCAGUGGCAGCG---GCCgagGCGGCUg -3'
miRNA:   3'- cUGUCGCCGUCGUaguUGG---CGUUGAg -5'
390 5' -54.5 AC_000011.1 + 16544 0.68 0.479632
Target:  5'- uGCAGCaGguGCugcCGACCGCGGCg- -3'
miRNA:   3'- cUGUCGcCguCGua-GUUGGCGUUGag -5'
390 5' -54.5 AC_000011.1 + 15937 0.76 0.141956
Target:  5'- cGGCGGCGGCAGCGgcCAucGCCaGCAugUCc -3'
miRNA:   3'- -CUGUCGCCGUCGUa-GU--UGG-CGUugAG- -5'
390 5' -54.5 AC_000011.1 + 13935 0.73 0.250006
Target:  5'- uGGCGGCGGCGGCGaugCAGCCcccGCuggaGGCUCc -3'
miRNA:   3'- -CUGUCGCCGUCGUa--GUUGG---CG----UUGAG- -5'
390 5' -54.5 AC_000011.1 + 15774 0.73 0.250006
Target:  5'- cGGCGGCGGC-GCAUCGcCCgGCGGCa- -3'
miRNA:   3'- -CUGUCGCCGuCGUAGUuGG-CGUUGag -5'
390 5' -54.5 AC_000011.1 + 26071 0.71 0.293635
Target:  5'- cACAGCGGCGGCAgCAgguggacugaggAUCGCGGCg- -3'
miRNA:   3'- cUGUCGCCGUCGUaGU------------UGGCGUUGag -5'
390 5' -54.5 AC_000011.1 + 30474 0.71 0.309444
Target:  5'- aACAGaCGGCGGCAUgCAAUgGCAgaucacccuGCUCa -3'
miRNA:   3'- cUGUC-GCCGUCGUA-GUUGgCGU---------UGAG- -5'
390 5' -54.5 AC_000011.1 + 17758 0.69 0.407742
Target:  5'- uGCAGCGGCAG-AUCAacaGCCGCcugGACcCg -3'
miRNA:   3'- cUGUCGCCGUCgUAGU---UGGCG---UUGaG- -5'
390 5' -54.5 AC_000011.1 + 16286 0.68 0.458432
Target:  5'- uGCAGUGGCgcgGGCGgaaggugCAACCGguGCUg -3'
miRNA:   3'- cUGUCGCCG---UCGUa------GUUGGCguUGAg -5'
390 5' -54.5 AC_000011.1 + 13432 0.66 0.614701
Target:  5'- gGACuGGCGGCcucgGGCA-CcGCCGCGGCa- -3'
miRNA:   3'- -CUG-UCGCCG----UCGUaGuUGGCGUUGag -5'
390 5' -54.5 AC_000011.1 + 17053 0.74 0.187175
Target:  5'- cGACGGCGGCGGCGagugguggucuugCGGCgGCGGCUg -3'
miRNA:   3'- -CUGUCGCCGUCGUa------------GUUGgCGUUGAg -5'
390 5' -54.5 AC_000011.1 + 18361 0.73 0.23605
Target:  5'- cACuGgGGCAGCAUCGAUgggguggccaucuUGCAACUCg -3'
miRNA:   3'- cUGuCgCCGUCGUAGUUG-------------GCGUUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.