miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
390 5' -54.5 AC_000011.1 + 13997 0.68 0.458432
Target:  5'- aGCGGgGGCuGCAUCGccGCCGCcGCcaUCg -3'
miRNA:   3'- cUGUCgCCGuCGUAGU--UGGCGuUG--AG- -5'
390 5' -54.5 AC_000011.1 + 25147 0.68 0.45217
Target:  5'- uGCAGCGGCAGUggCAcucgagcaggcccucGCCGCugacgucCUCg -3'
miRNA:   3'- cUGUCGCCGUCGuaGU---------------UGGCGuu-----GAG- -5'
390 5' -54.5 AC_000011.1 + 17758 0.69 0.407742
Target:  5'- uGCAGCGGCAG-AUCAacaGCCGCcugGACcCg -3'
miRNA:   3'- cUGUCGCCGUCgUAGU---UGGCG---UUGaG- -5'
390 5' -54.5 AC_000011.1 + 9470 0.7 0.379061
Target:  5'- aGAUGcGCGGCGGCGUCuucacGCUGCGGCc- -3'
miRNA:   3'- -CUGU-CGCCGUCGUAGu----UGGCGUUGag -5'
390 5' -54.5 AC_000011.1 + 30474 0.71 0.309444
Target:  5'- aACAGaCGGCGGCAUgCAAUgGCAgaucacccuGCUCa -3'
miRNA:   3'- cUGUC-GCCGUCGUA-GUUGgCGU---------UGAG- -5'
390 5' -54.5 AC_000011.1 + 17138 0.71 0.293635
Target:  5'- cGCGcGCGGCAGgGUCAgaggugcgcgGCCGCGGCg- -3'
miRNA:   3'- cUGU-CGCCGUCgUAGU----------UGGCGUUGag -5'
390 5' -54.5 AC_000011.1 + 26071 0.71 0.293635
Target:  5'- cACAGCGGCGGCAgCAgguggacugaggAUCGCGGCg- -3'
miRNA:   3'- cUGUCGCCGUCGUaGU------------UGGCGUUGag -5'
390 5' -54.5 AC_000011.1 + 11611 0.72 0.278464
Target:  5'- gGACAGCGGCAGC-----CCGC-GCUCc -3'
miRNA:   3'- -CUGUCGCCGUCGuaguuGGCGuUGAG- -5'
390 5' -54.5 AC_000011.1 + 18535 0.72 0.278464
Target:  5'- --aAGC-GCAGCGUCAGCCGCuGGCUg -3'
miRNA:   3'- cugUCGcCGUCGUAGUUGGCG-UUGAg -5'
390 5' -54.5 AC_000011.1 + 18221 0.72 0.263924
Target:  5'- aGCAGCGGCGGCGcuUCAcacuCUGC-ACUCc -3'
miRNA:   3'- cUGUCGCCGUCGU--AGUu---GGCGuUGAG- -5'
390 5' -54.5 AC_000011.1 + 13935 0.73 0.250006
Target:  5'- uGGCGGCGGCGGCGaugCAGCCcccGCuggaGGCUCc -3'
miRNA:   3'- -CUGUCGCCGUCGUa--GUUGG---CG----UUGAG- -5'
390 5' -54.5 AC_000011.1 + 15774 0.73 0.250006
Target:  5'- cGGCGGCGGC-GCAUCGcCCgGCGGCa- -3'
miRNA:   3'- -CUGUCGCCGuCGUAGUuGG-CGUUGag -5'
390 5' -54.5 AC_000011.1 + 3727 0.73 0.243277
Target:  5'- cGGCAGauGCAGCAgcugCGGCgGCAGCUg -3'
miRNA:   3'- -CUGUCgcCGUCGUa---GUUGgCGUUGAg -5'
390 5' -54.5 AC_000011.1 + 18361 0.73 0.23605
Target:  5'- cACuGgGGCAGCAUCGAUgggguggccaucuUGCAACUCg -3'
miRNA:   3'- cUGuCgCCGUCGUAGUUG-------------GCGUUGAG- -5'
390 5' -54.5 AC_000011.1 + 17053 0.74 0.187175
Target:  5'- cGACGGCGGCGGCGagugguggucuugCGGCgGCGGCUg -3'
miRNA:   3'- -CUGUCGCCGUCGUa------------GUUGgCGUUGAg -5'
390 5' -54.5 AC_000011.1 + 15937 0.76 0.141956
Target:  5'- cGGCGGCGGCAGCGgcCAucGCCaGCAugUCc -3'
miRNA:   3'- -CUGUCGCCGUCGUa-GU--UGG-CGUugAG- -5'
390 5' -54.5 AC_000011.1 + 33871 0.76 0.137868
Target:  5'- aGCGGCGGCGGCAgCGACUGCuGCg- -3'
miRNA:   3'- cUGUCGCCGUCGUaGUUGGCGuUGag -5'
390 5' -54.5 AC_000011.1 + 12744 1.1 0.000462
Target:  5'- gGACAGCGGCAGCAUCAACCGCAACUCg -3'
miRNA:   3'- -CUGUCGCCGUCGUAGUUGGCGUUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.