miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3902 3' -55.4 NC_001650.1 + 65004 1.11 0.002952
Target:  5'- aGGACGCGGGCCAGCACGUGAAAGUGAg -3'
miRNA:   3'- -CCUGCGCCCGGUCGUGCACUUUCACU- -5'
3902 3' -55.4 NC_001650.1 + 86358 0.76 0.455858
Target:  5'- gGGGCGCgagGGGgCAGCugGUGGccGUGAc -3'
miRNA:   3'- -CCUGCG---CCCgGUCGugCACUuuCACU- -5'
3902 3' -55.4 NC_001650.1 + 62847 0.75 0.521698
Target:  5'- gGGGCGauGGCCAGCAUgGUGGAgaagGGUGGc -3'
miRNA:   3'- -CCUGCgcCCGGUCGUG-CACUU----UCACU- -5'
3902 3' -55.4 NC_001650.1 + 161793 0.75 0.528495
Target:  5'- uGGGCGCgcccgagcaccucuGGGCCAGCAUGUGGGAc--- -3'
miRNA:   3'- -CCUGCG--------------CCCGGUCGUGCACUUUcacu -5'
3902 3' -55.4 NC_001650.1 + 121987 0.74 0.557972
Target:  5'- cGGGgGCGGGUCaggcGGCACGUGAugcuguucaggcucAGGUGGc -3'
miRNA:   3'- -CCUgCGCCCGG----UCGUGCACU--------------UUCACU- -5'
3902 3' -55.4 NC_001650.1 + 75408 0.74 0.560947
Target:  5'- -cGCGCGGGCCAGguUGUcccGAGUGAc -3'
miRNA:   3'- ccUGCGCCCGGUCguGCAcu-UUCACU- -5'
3902 3' -55.4 NC_001650.1 + 141445 0.74 0.560947
Target:  5'- gGGugGCGGGCCAGCcagagggaGCGaGAGGGa-- -3'
miRNA:   3'- -CCugCGCCCGGUCG--------UGCaCUUUCacu -5'
3902 3' -55.4 NC_001650.1 + 63435 0.74 0.611038
Target:  5'- gGGGCGCGGuCCAGUggGCGUgccagaaggaGAAGGUGAu -3'
miRNA:   3'- -CCUGCGCCcGGUCG--UGCA----------CUUUCACU- -5'
3902 3' -55.4 NC_001650.1 + 60198 0.72 0.681582
Target:  5'- cGGGCgGCGGGUCAGCACG-GGGAc--- -3'
miRNA:   3'- -CCUG-CGCCCGGUCGUGCaCUUUcacu -5'
3902 3' -55.4 NC_001650.1 + 35298 0.72 0.701504
Target:  5'- cGGGCGCGGGCCAGggccaCACGccu--GUGGc -3'
miRNA:   3'- -CCUGCGCCCGGUC-----GUGCacuuuCACU- -5'
3902 3' -55.4 NC_001650.1 + 68261 0.72 0.711383
Target:  5'- gGGGCgGgGGGUCucGCACGUGAAcGUGGc -3'
miRNA:   3'- -CCUG-CgCCCGGu-CGUGCACUUuCACU- -5'
3902 3' -55.4 NC_001650.1 + 104843 0.72 0.721197
Target:  5'- gGGGCGCGGGUaguGGCACaguGUGAAucuGGUGc -3'
miRNA:   3'- -CCUGCGCCCGg--UCGUG---CACUU---UCACu -5'
3902 3' -55.4 NC_001650.1 + 117839 0.72 0.725102
Target:  5'- aGGcACGCGGGCaggCAcacguuggccagguuGCAgGUGGAGGUGAa -3'
miRNA:   3'- -CC-UGCGCCCG---GU---------------CGUgCACUUUCACU- -5'
3902 3' -55.4 NC_001650.1 + 9670 0.71 0.75962
Target:  5'- gGGGCGguCGGGCCAuGCACccaGUGGcccaauGAGUGAc -3'
miRNA:   3'- -CCUGC--GCCCGGU-CGUG---CACU------UUCACU- -5'
3902 3' -55.4 NC_001650.1 + 52191 0.71 0.75962
Target:  5'- cGGcCGC-GGCCAGCGCGUaGAgcAGGUGc -3'
miRNA:   3'- -CCuGCGcCCGGUCGUGCA-CU--UUCACu -5'
3902 3' -55.4 NC_001650.1 + 2535 0.71 0.75962
Target:  5'- -cGCGCGGGCC-GCGCGUugccagGGAAGUa- -3'
miRNA:   3'- ccUGCGCCCGGuCGUGCA------CUUUCAcu -5'
3902 3' -55.4 NC_001650.1 + 169242 0.71 0.75962
Target:  5'- -cGCGCGGGCC-GCGCGUugccagGGAAGUa- -3'
miRNA:   3'- ccUGCGCCCGGuCGUGCA------CUUUCAcu -5'
3902 3' -55.4 NC_001650.1 + 176377 0.71 0.75962
Target:  5'- gGGGCGguCGGGCCAuGCACccaGUGGcccaauGAGUGAc -3'
miRNA:   3'- -CCUGC--GCCCGGU-CGUG---CACU------UUCACU- -5'
3902 3' -55.4 NC_001650.1 + 40570 0.71 0.768973
Target:  5'- gGGACGCGGGCUcGCGCGUc------- -3'
miRNA:   3'- -CCUGCGCCCGGuCGUGCAcuuucacu -5'
3902 3' -55.4 NC_001650.1 + 115124 0.7 0.778207
Target:  5'- -uGCGCGGGCgGGgACcaGGAGGUGAg -3'
miRNA:   3'- ccUGCGCCCGgUCgUGcaCUUUCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.