miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3902 3' -55.4 NC_001650.1 + 127573 0.68 0.890517
Target:  5'- gGGGCGaccgcccaGGGCCAGgGgGUGGAcuuuagcgaGGUGGa -3'
miRNA:   3'- -CCUGCg-------CCCGGUCgUgCACUU---------UCACU- -5'
3902 3' -55.4 NC_001650.1 + 181404 0.69 0.838811
Target:  5'- cGGACccgGCGGGCgAGCGagGUGAGGGa-- -3'
miRNA:   3'- -CCUG---CGCCCGgUCGUg-CACUUUCacu -5'
3902 3' -55.4 NC_001650.1 + 146672 0.69 0.862193
Target:  5'- cGGGCGaCGGGcCCGGCGCGgUGAc----- -3'
miRNA:   3'- -CCUGC-GCCC-GGUCGUGC-ACUuucacu -5'
3902 3' -55.4 NC_001650.1 + 58690 0.69 0.862193
Target:  5'- uGGACGCGGcGCagagccugucCAGCAgCGUGAAGaacuccucggccGUGAu -3'
miRNA:   3'- -CCUGCGCC-CG----------GUCGU-GCACUUU------------CACU- -5'
3902 3' -55.4 NC_001650.1 + 82601 0.68 0.86959
Target:  5'- --uCGCGGGCCugugcaGGUGCGUGAGgucGGUGu -3'
miRNA:   3'- ccuGCGCCCGG------UCGUGCACUU---UCACu -5'
3902 3' -55.4 NC_001650.1 + 98620 0.68 0.86959
Target:  5'- cGGACaGCGGGUCAuaguGCACuGUGuu-GUGGg -3'
miRNA:   3'- -CCUG-CGCCCGGU----CGUG-CACuuuCACU- -5'
3902 3' -55.4 NC_001650.1 + 131907 0.68 0.877487
Target:  5'- aGGACggGCGGGCCAGgGCGggcuuccugcuGUGGg -3'
miRNA:   3'- -CCUG--CGCCCGGUCgUGCacuuu------CACU- -5'
3902 3' -55.4 NC_001650.1 + 22440 0.68 0.883757
Target:  5'- cGGGCGCgcccacccuccuGGGCUu---CGUGAGGGUGAu -3'
miRNA:   3'- -CCUGCG------------CCCGGucguGCACUUUCACU- -5'
3902 3' -55.4 NC_001650.1 + 124221 0.68 0.890517
Target:  5'- aGAgGUGGGCCagaAGCugGUGAaGAG-GAg -3'
miRNA:   3'- cCUgCGCCCGG---UCGugCACU-UUCaCU- -5'
3902 3' -55.4 NC_001650.1 + 129018 0.69 0.838811
Target:  5'- aGGGCGCGGGCgAGCagaucauagcggACGccaUGGAggcGGUGGc -3'
miRNA:   3'- -CCUGCGCCCGgUCG------------UGC---ACUU---UCACU- -5'
3902 3' -55.4 NC_001650.1 + 14697 0.69 0.838811
Target:  5'- cGGACccgGCGGGCgAGCGagGUGAGGGa-- -3'
miRNA:   3'- -CCUG---CGCCCGgUCGUg-CACUUUCacu -5'
3902 3' -55.4 NC_001650.1 + 31231 0.7 0.822298
Target:  5'- cGGgGCGGGCCGGgAC--GAGGGUGGg -3'
miRNA:   3'- cCUgCGCCCGGUCgUGcaCUUUCACU- -5'
3902 3' -55.4 NC_001650.1 + 121987 0.74 0.557972
Target:  5'- cGGGgGCGGGUCaggcGGCACGUGAugcuguucaggcucAGGUGGc -3'
miRNA:   3'- -CCUgCGCCCGG----UCGUGCACU--------------UUCACU- -5'
3902 3' -55.4 NC_001650.1 + 141445 0.74 0.560947
Target:  5'- gGGugGCGGGCCAGCcagagggaGCGaGAGGGa-- -3'
miRNA:   3'- -CCugCGCCCGGUCG--------UGCaCUUUCacu -5'
3902 3' -55.4 NC_001650.1 + 60198 0.72 0.681582
Target:  5'- cGGGCgGCGGGUCAGCACG-GGGAc--- -3'
miRNA:   3'- -CCUG-CGCCCGGUCGUGCaCUUUcacu -5'
3902 3' -55.4 NC_001650.1 + 35298 0.72 0.701504
Target:  5'- cGGGCGCGGGCCAGggccaCACGccu--GUGGc -3'
miRNA:   3'- -CCUGCGCCCGGUC-----GUGCacuuuCACU- -5'
3902 3' -55.4 NC_001650.1 + 117839 0.72 0.725102
Target:  5'- aGGcACGCGGGCaggCAcacguuggccagguuGCAgGUGGAGGUGAa -3'
miRNA:   3'- -CC-UGCGCCCG---GU---------------CGUgCACUUUCACU- -5'
3902 3' -55.4 NC_001650.1 + 115124 0.7 0.778207
Target:  5'- -uGCGCGGGCgGGgACcaGGAGGUGAg -3'
miRNA:   3'- ccUGCGCCCGgUCgUGcaCUUUCACU- -5'
3902 3' -55.4 NC_001650.1 + 22338 0.7 0.787314
Target:  5'- gGGGCaacguGCuGGGCCuGCACcUGggGGUGGu -3'
miRNA:   3'- -CCUG-----CG-CCCGGuCGUGcACuuUCACU- -5'
3902 3' -55.4 NC_001650.1 + 88343 0.7 0.81721
Target:  5'- cGGACGCgggcaggguccugacGGGCCuGCGCGUcAAGGggGAg -3'
miRNA:   3'- -CCUGCG---------------CCCGGuCGUGCAcUUUCa-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.