miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3902 3' -55.4 NC_001650.1 + 2535 0.71 0.75962
Target:  5'- -cGCGCGGGCC-GCGCGUugccagGGAAGUa- -3'
miRNA:   3'- ccUGCGCCCGGuCGUGCA------CUUUCAcu -5'
3902 3' -55.4 NC_001650.1 + 3509 0.68 0.86959
Target:  5'- uGGGCggGCGGGCgGGCAgGUGggGa--- -3'
miRNA:   3'- -CCUG--CGCCCGgUCGUgCACuuUcacu -5'
3902 3' -55.4 NC_001650.1 + 9670 0.71 0.75962
Target:  5'- gGGGCGguCGGGCCAuGCACccaGUGGcccaauGAGUGAc -3'
miRNA:   3'- -CCUGC--GCCCGGU-CGUG---CACU------UUCACU- -5'
3902 3' -55.4 NC_001650.1 + 14697 0.69 0.838811
Target:  5'- cGGACccgGCGGGCgAGCGagGUGAGGGa-- -3'
miRNA:   3'- -CCUG---CGCCCGgUCGUg-CACUUUCacu -5'
3902 3' -55.4 NC_001650.1 + 15047 0.66 0.957613
Target:  5'- aGGAagaugccaGCGGGCC-GCugGgggGGAAGgGAc -3'
miRNA:   3'- -CCUg-------CGCCCGGuCGugCa--CUUUCaCU- -5'
3902 3' -55.4 NC_001650.1 + 18006 0.66 0.953824
Target:  5'- gGGGCGCucuGCCAGUAUGggGAGAGacUGAg -3'
miRNA:   3'- -CCUGCGcc-CGGUCGUGCa-CUUUC--ACU- -5'
3902 3' -55.4 NC_001650.1 + 22338 0.7 0.787314
Target:  5'- gGGGCaacguGCuGGGCCuGCACcUGggGGUGGu -3'
miRNA:   3'- -CCUG-----CG-CCCGGuCGUGcACuuUCACU- -5'
3902 3' -55.4 NC_001650.1 + 22440 0.68 0.883757
Target:  5'- cGGGCGCgcccacccuccuGGGCUu---CGUGAGGGUGAu -3'
miRNA:   3'- -CCUGCG------------CCCGGucguGCACUUUCACU- -5'
3902 3' -55.4 NC_001650.1 + 26903 0.67 0.920938
Target:  5'- aGGAgaggcuguacCGCGG-CCAGCugGUGguGGUaGAg -3'
miRNA:   3'- -CCU----------GCGCCcGGUCGugCACuuUCA-CU- -5'
3902 3' -55.4 NC_001650.1 + 26920 0.68 0.86959
Target:  5'- uGGGCGaGGGCgGGgGCGgGGAGGUGc -3'
miRNA:   3'- -CCUGCgCCCGgUCgUGCaCUUUCACu -5'
3902 3' -55.4 NC_001650.1 + 27588 0.66 0.957613
Target:  5'- cGGACuacaGGGcCCAGCugGaGAGggcGGUGAu -3'
miRNA:   3'- -CCUGcg--CCC-GGUCGugCaCUU---UCACU- -5'
3902 3' -55.4 NC_001650.1 + 28379 0.68 0.888512
Target:  5'- uGGACGCGGggucccuggaggacGCguGCGCGggcgGGGAGcUGAc -3'
miRNA:   3'- -CCUGCGCC--------------CGguCGUGCa---CUUUC-ACU- -5'
3902 3' -55.4 NC_001650.1 + 29050 0.67 0.93149
Target:  5'- gGGGCGCGGGgggUGGCcgACGUGggGGa-- -3'
miRNA:   3'- -CCUGCGCCCg--GUCG--UGCACuuUCacu -5'
3902 3' -55.4 NC_001650.1 + 31231 0.7 0.822298
Target:  5'- cGGgGCGGGCCGGgAC--GAGGGUGGg -3'
miRNA:   3'- cCUgCGCCCGGUCgUGcaCUUUCACU- -5'
3902 3' -55.4 NC_001650.1 + 35298 0.72 0.701504
Target:  5'- cGGGCGCGGGCCAGggccaCACGccu--GUGGc -3'
miRNA:   3'- -CCUGCGCCCGGUC-----GUGCacuuuCACU- -5'
3902 3' -55.4 NC_001650.1 + 35583 0.68 0.874645
Target:  5'- -uAUGCGGGguCCGGCGCGUgcgagcgccuggggGAGGGUGGu -3'
miRNA:   3'- ccUGCGCCC--GGUCGUGCA--------------CUUUCACU- -5'
3902 3' -55.4 NC_001650.1 + 40570 0.71 0.768973
Target:  5'- gGGACGCGGGCUcGCGCGUc------- -3'
miRNA:   3'- -CCUGCGCCCGGuCGUGCAcuuucacu -5'
3902 3' -55.4 NC_001650.1 + 47757 0.7 0.825656
Target:  5'- uGAUGCGGGCCcugugcgagggccuGCGCGUGGgcGAGgagGAc -3'
miRNA:   3'- cCUGCGCCCGGu-------------CGUGCACU--UUCa--CU- -5'
3902 3' -55.4 NC_001650.1 + 48173 0.66 0.957613
Target:  5'- cGGugGUGGggaGCCuGCugGUGAuAGcGGu -3'
miRNA:   3'- -CCugCGCC---CGGuCGugCACUuUCaCU- -5'
3902 3' -55.4 NC_001650.1 + 51008 0.68 0.905832
Target:  5'- gGGGCGCGGGCgCGGCGgcCcccucucagaucaagGUGGgcGUGAc -3'
miRNA:   3'- -CCUGCGCCCG-GUCGU--G---------------CACUuuCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.