miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3912 3' -56 NC_001650.1 + 72660 1.08 0.00364
Target:  5'- uGAACACCCAGCACGCCAGGGUCAAGAc -3'
miRNA:   3'- -CUUGUGGGUCGUGCGGUCCCAGUUCU- -5'
3912 3' -56 NC_001650.1 + 137705 0.76 0.422255
Target:  5'- aGGGCGCCCGGUcgccgccgccccgACGCCGGGGagAGGGu -3'
miRNA:   3'- -CUUGUGGGUCG-------------UGCGGUCCCagUUCU- -5'
3912 3' -56 NC_001650.1 + 27098 0.75 0.450002
Target:  5'- ---gGCCCAG-GCGCuCAGGGUCAGGGa -3'
miRNA:   3'- cuugUGGGUCgUGCG-GUCCCAGUUCU- -5'
3912 3' -56 NC_001650.1 + 116109 0.75 0.458245
Target:  5'- -cGCGCCCAuccugaccaacccGCGCGCCAGgcucaaccuGGUCAAGAa -3'
miRNA:   3'- cuUGUGGGU-------------CGUGCGGUC---------CCAGUUCU- -5'
3912 3' -56 NC_001650.1 + 159677 0.75 0.477784
Target:  5'- cGGACGCguCCAGCGCgGCCAGGGggUAGGGg -3'
miRNA:   3'- -CUUGUG--GGUCGUG-CGGUCCCa-GUUCU- -5'
3912 3' -56 NC_001650.1 + 119324 0.75 0.487231
Target:  5'- ---aGCCCAGCAUGCagaccgcuccCAGGGUCAGGu -3'
miRNA:   3'- cuugUGGGUCGUGCG----------GUCCCAGUUCu -5'
3912 3' -56 NC_001650.1 + 160361 0.72 0.636588
Target:  5'- gGAugACCgAGCGCGCCuccuucaGGUCGGGGg -3'
miRNA:   3'- -CUugUGGgUCGUGCGGuc-----CCAGUUCU- -5'
3912 3' -56 NC_001650.1 + 43036 0.72 0.636588
Target:  5'- ----gUCCGGCGgGCCGGGGUCAcccAGAg -3'
miRNA:   3'- cuuguGGGUCGUgCGGUCCCAGU---UCU- -5'
3912 3' -56 NC_001650.1 + 25115 0.72 0.636588
Target:  5'- --cCACCCAGgaGCGCCAGGaagaUCGAGAg -3'
miRNA:   3'- cuuGUGGGUCg-UGCGGUCCc---AGUUCU- -5'
3912 3' -56 NC_001650.1 + 37601 0.71 0.65696
Target:  5'- cGAGCGCCU-GUGCGCCaugAGGGUgGAGGa -3'
miRNA:   3'- -CUUGUGGGuCGUGCGG---UCCCAgUUCU- -5'
3912 3' -56 NC_001650.1 + 125877 0.71 0.676241
Target:  5'- -cGCACCCAGCACaGCUcgcacaaAGGGagGAGGg -3'
miRNA:   3'- cuUGUGGGUCGUG-CGG-------UCCCagUUCU- -5'
3912 3' -56 NC_001650.1 + 30281 0.71 0.677253
Target:  5'- aGAAgGCCCgugcaagaGGCACGCgC-GGGUCAGGGu -3'
miRNA:   3'- -CUUgUGGG--------UCGUGCG-GuCCCAGUUCU- -5'
3912 3' -56 NC_001650.1 + 62134 0.71 0.677253
Target:  5'- uGAGCuggaAGUAgGCCAGGGUCAGGGg -3'
miRNA:   3'- -CUUGugggUCGUgCGGUCCCAGUUCU- -5'
3912 3' -56 NC_001650.1 + 156115 0.71 0.687349
Target:  5'- gGGGCACCucCAGCAcCGCCccgGGGGUCucuGAGAa -3'
miRNA:   3'- -CUUGUGG--GUCGU-GCGG---UCCCAG---UUCU- -5'
3912 3' -56 NC_001650.1 + 50832 0.71 0.697399
Target:  5'- cGGC-CCCGGCGCGCgAGGGcggCGAGc -3'
miRNA:   3'- cUUGuGGGUCGUGCGgUCCCa--GUUCu -5'
3912 3' -56 NC_001650.1 + 75534 0.71 0.707395
Target:  5'- gGAGuCGCCCAGCGCgGCCAGGuccagCAGGc -3'
miRNA:   3'- -CUU-GUGGGUCGUG-CGGUCCca---GUUCu -5'
3912 3' -56 NC_001650.1 + 158351 0.71 0.707395
Target:  5'- aGGCGCCCcccucGGCG-GCCGGGGUCAGc- -3'
miRNA:   3'- cUUGUGGG-----UCGUgCGGUCCCAGUUcu -5'
3912 3' -56 NC_001650.1 + 71886 0.71 0.707395
Target:  5'- uGAACGCCCAGCucauCGCCcuGGUgAuAGAg -3'
miRNA:   3'- -CUUGUGGGUCGu---GCGGucCCAgU-UCU- -5'
3912 3' -56 NC_001650.1 + 68103 0.71 0.707395
Target:  5'- ---aGCCUGGCGCGCgGGuuGGUCAGGAu -3'
miRNA:   3'- cuugUGGGUCGUGCGgUC--CCAGUUCU- -5'
3912 3' -56 NC_001650.1 + 8560 0.7 0.717328
Target:  5'- aGAGC-CCCAGCccugcggggUGCCGGGGUUAGGc -3'
miRNA:   3'- -CUUGuGGGUCGu--------GCGGUCCCAGUUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.