miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3912 3' -56 NC_001650.1 + 173608 0.68 0.852618
Target:  5'- ---uGCCCAGCAa-CCAGGGUCu--- -3'
miRNA:   3'- cuugUGGGUCGUgcGGUCCCAGuucu -5'
3912 3' -56 NC_001650.1 + 121781 0.7 0.756245
Target:  5'- aGGCGCCCGGCG-GCgGGGGUaaCGGGGa -3'
miRNA:   3'- cUUGUGGGUCGUgCGgUCCCA--GUUCU- -5'
3912 3' -56 NC_001650.1 + 128242 0.7 0.756245
Target:  5'- uGGGCGCCCuGCGCGCCuacGGGcccgugccCGAGGg -3'
miRNA:   3'- -CUUGUGGGuCGUGCGGu--CCCa-------GUUCU- -5'
3912 3' -56 NC_001650.1 + 59667 0.69 0.784323
Target:  5'- cGGACGCCuCGGC-CGCCugcGGGUacCAGGGg -3'
miRNA:   3'- -CUUGUGG-GUCGuGCGGu--CCCA--GUUCU- -5'
3912 3' -56 NC_001650.1 + 83546 0.69 0.792519
Target:  5'- gGGGCGCCCcguuucaGGCugGCCcuGGG-CAAGGg -3'
miRNA:   3'- -CUUGUGGG-------UCGugCGGu-CCCaGUUCU- -5'
3912 3' -56 NC_001650.1 + 72052 0.69 0.793423
Target:  5'- aGugGCCCuggAGCAgGCCcuGGUCAAGGu -3'
miRNA:   3'- cUugUGGG---UCGUgCGGucCCAGUUCU- -5'
3912 3' -56 NC_001650.1 + 137412 0.69 0.802378
Target:  5'- aAACACCCacAGCcgGCGCCAGGGcCuAGu -3'
miRNA:   3'- cUUGUGGG--UCG--UGCGGUCCCaGuUCu -5'
3912 3' -56 NC_001650.1 + 62149 0.69 0.81118
Target:  5'- gGAGCACCCAGCAa-CCuauGGGGU-GGGAa -3'
miRNA:   3'- -CUUGUGGGUCGUgcGG---UCCCAgUUCU- -5'
3912 3' -56 NC_001650.1 + 6901 0.68 0.852618
Target:  5'- ---uGCCCAGCAa-CCAGGGUCu--- -3'
miRNA:   3'- cuugUGGGUCGUgcGGUCCCAGuucu -5'
3912 3' -56 NC_001650.1 + 86918 0.7 0.736967
Target:  5'- cAGCACCCAGaacaGCaCCAGGGcCAGGu -3'
miRNA:   3'- cUUGUGGGUCg---UGcGGUCCCaGUUCu -5'
3912 3' -56 NC_001650.1 + 68103 0.71 0.707395
Target:  5'- ---aGCCUGGCGCGCgGGuuGGUCAGGAu -3'
miRNA:   3'- cuugUGGGUCGUGCGgUC--CCAGUUCU- -5'
3912 3' -56 NC_001650.1 + 158351 0.71 0.707395
Target:  5'- aGGCGCCCcccucGGCG-GCCGGGGUCAGc- -3'
miRNA:   3'- cUUGUGGG-----UCGUgCGGUCCCAGUUcu -5'
3912 3' -56 NC_001650.1 + 27098 0.75 0.450002
Target:  5'- ---gGCCCAG-GCGCuCAGGGUCAGGGa -3'
miRNA:   3'- cuugUGGGUCgUGCG-GUCCCAGUUCU- -5'
3912 3' -56 NC_001650.1 + 119324 0.75 0.487231
Target:  5'- ---aGCCCAGCAUGCagaccgcuccCAGGGUCAGGu -3'
miRNA:   3'- cuugUGGGUCGUGCG----------GUCCCAGUUCu -5'
3912 3' -56 NC_001650.1 + 37601 0.71 0.65696
Target:  5'- cGAGCGCCU-GUGCGCCaugAGGGUgGAGGa -3'
miRNA:   3'- -CUUGUGGGuCGUGCGG---UCCCAgUUCU- -5'
3912 3' -56 NC_001650.1 + 125877 0.71 0.676241
Target:  5'- -cGCACCCAGCACaGCUcgcacaaAGGGagGAGGg -3'
miRNA:   3'- cuUGUGGGUCGUG-CGG-------UCCCagUUCU- -5'
3912 3' -56 NC_001650.1 + 30281 0.71 0.677253
Target:  5'- aGAAgGCCCgugcaagaGGCACGCgC-GGGUCAGGGu -3'
miRNA:   3'- -CUUgUGGG--------UCGUGCG-GuCCCAGUUCU- -5'
3912 3' -56 NC_001650.1 + 156115 0.71 0.687349
Target:  5'- gGGGCACCucCAGCAcCGCCccgGGGGUCucuGAGAa -3'
miRNA:   3'- -CUUGUGG--GUCGU-GCGG---UCCCAG---UUCU- -5'
3912 3' -56 NC_001650.1 + 50832 0.71 0.697399
Target:  5'- cGGC-CCCGGCGCGCgAGGGcggCGAGc -3'
miRNA:   3'- cUUGuGGGUCGUGCGgUCCCa--GUUCu -5'
3912 3' -56 NC_001650.1 + 71886 0.71 0.707395
Target:  5'- uGAACGCCCAGCucauCGCCcuGGUgAuAGAg -3'
miRNA:   3'- -CUUGUGGGUCGu---GCGGucCCAgU-UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.