miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3912 3' -56 NC_001650.1 + 592 0.66 0.930761
Target:  5'- gGAGCcCCCAGUGacucaGUUAGGGUCAGc- -3'
miRNA:   3'- -CUUGuGGGUCGUg----CGGUCCCAGUUcu -5'
3912 3' -56 NC_001650.1 + 4348 0.68 0.819822
Target:  5'- -cACACuCCaAGCAUgaGCUAGGGUUAGGGc -3'
miRNA:   3'- cuUGUG-GG-UCGUG--CGGUCCCAGUUCU- -5'
3912 3' -56 NC_001650.1 + 6901 0.68 0.852618
Target:  5'- ---uGCCCAGCAa-CCAGGGUCu--- -3'
miRNA:   3'- cuugUGGGUCGUgcGGUCCCAGuucu -5'
3912 3' -56 NC_001650.1 + 7234 0.66 0.902184
Target:  5'- ---uGCCCAGCAa-CCGGGGUCu--- -3'
miRNA:   3'- cuugUGGGUCGUgcGGUCCCAGuucu -5'
3912 3' -56 NC_001650.1 + 8560 0.7 0.717328
Target:  5'- aGAGC-CCCAGCccugcggggUGCCGGGGUUAGGc -3'
miRNA:   3'- -CUUGuGGGUCGu--------GCGGUCCCAGUUCu -5'
3912 3' -56 NC_001650.1 + 17406 0.68 0.844699
Target:  5'- aGAGCACCC-GCAU--UAGGGUUggGAg -3'
miRNA:   3'- -CUUGUGGGuCGUGcgGUCCCAGuuCU- -5'
3912 3' -56 NC_001650.1 + 22628 0.68 0.852618
Target:  5'- cAGCGCCCccAGCGCGCgGGGGgcgCGu-- -3'
miRNA:   3'- cUUGUGGG--UCGUGCGgUCCCa--GUucu -5'
3912 3' -56 NC_001650.1 + 25115 0.72 0.636588
Target:  5'- --cCACCCAGgaGCGCCAGGaagaUCGAGAg -3'
miRNA:   3'- cuuGUGGGUCg-UGCGGUCCc---AGUUCU- -5'
3912 3' -56 NC_001650.1 + 27098 0.75 0.450002
Target:  5'- ---gGCCCAG-GCGCuCAGGGUCAGGGa -3'
miRNA:   3'- cuugUGGGUCgUGCG-GUCCCAGUUCU- -5'
3912 3' -56 NC_001650.1 + 29031 0.68 0.860339
Target:  5'- gGAGUACCC-GCACGCCcucGGGGcgCGGGGg -3'
miRNA:   3'- -CUUGUGGGuCGUGCGG---UCCCa-GUUCU- -5'
3912 3' -56 NC_001650.1 + 30184 0.67 0.875161
Target:  5'- aGAACACCC-GCGagGCCcugGGGGUCcuGAc -3'
miRNA:   3'- -CUUGUGGGuCGUg-CGG---UCCCAGuuCU- -5'
3912 3' -56 NC_001650.1 + 30281 0.71 0.677253
Target:  5'- aGAAgGCCCgugcaagaGGCACGCgC-GGGUCAGGGu -3'
miRNA:   3'- -CUUgUGGG--------UCGUGCG-GuCCCAGUUCU- -5'
3912 3' -56 NC_001650.1 + 37601 0.71 0.65696
Target:  5'- cGAGCGCCU-GUGCGCCaugAGGGUgGAGGa -3'
miRNA:   3'- -CUUGUGGGuCGUGCGG---UCCCAgUUCU- -5'
3912 3' -56 NC_001650.1 + 41315 0.67 0.881552
Target:  5'- --uCGCCCgAGCGCGCCGgcugcacGGGcCGGGGc -3'
miRNA:   3'- cuuGUGGG-UCGUGCGGU-------CCCaGUUCU- -5'
3912 3' -56 NC_001650.1 + 42945 0.7 0.755291
Target:  5'- uAAUACCCcGCGCGCCcgcucgccgccgcGGGGcCGAGGg -3'
miRNA:   3'- cUUGUGGGuCGUGCGG-------------UCCCaGUUCU- -5'
3912 3' -56 NC_001650.1 + 43036 0.72 0.636588
Target:  5'- ----gUCCGGCGgGCCGGGGUCAcccAGAg -3'
miRNA:   3'- cuuguGGGUCGUgCGGUCCCAGU---UCU- -5'
3912 3' -56 NC_001650.1 + 44411 0.67 0.882251
Target:  5'- aGGACACa----ACGCCAGGGaCAAGAg -3'
miRNA:   3'- -CUUGUGggucgUGCGGUCCCaGUUCU- -5'
3912 3' -56 NC_001650.1 + 47683 0.67 0.895767
Target:  5'- uGGCACaCCGGCGCGCCcuuuugcuGGGaUgGAGGa -3'
miRNA:   3'- cUUGUG-GGUCGUGCGGu-------CCC-AgUUCU- -5'
3912 3' -56 NC_001650.1 + 48042 0.66 0.914322
Target:  5'- ----gUCCAuGCGgGUCGGGGUCGAGGc -3'
miRNA:   3'- cuuguGGGU-CGUgCGGUCCCAGUUCU- -5'
3912 3' -56 NC_001650.1 + 49892 0.68 0.844699
Target:  5'- gGAGgGCCCcggGGgGCGCCGGGGgggAAGAc -3'
miRNA:   3'- -CUUgUGGG---UCgUGCGGUCCCag-UUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.