miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3912 5' -64.6 NC_001650.1 + 87951 0.69 0.369659
Target:  5'- cGGCg--GGGCcGGaccgGGUCGCCACCCAg -3'
miRNA:   3'- -CUGggaCCCGuCCg---CCAGCGGUGGGU- -5'
3912 5' -64.6 NC_001650.1 + 42513 0.69 0.377317
Target:  5'- uGugUUUGGGCAGGUGG--GCCACCg- -3'
miRNA:   3'- -CugGGACCCGUCCGCCagCGGUGGgu -5'
3912 5' -64.6 NC_001650.1 + 82354 0.69 0.382741
Target:  5'- cGCCCgccugcacggaggcUGGaUAGGCGGUCGCCugCUg -3'
miRNA:   3'- cUGGG--------------ACCcGUCCGCCAGCGGugGGu -5'
3912 5' -64.6 NC_001650.1 + 135946 0.69 0.385082
Target:  5'- uGGCCCugUGGGCuAGGgGGcuaGCCGCCUg -3'
miRNA:   3'- -CUGGG--ACCCG-UCCgCCag-CGGUGGGu -5'
3912 5' -64.6 NC_001650.1 + 71985 0.69 0.392951
Target:  5'- aGCaCCUGGGCgGGGCGGcCGUC-UCCAa -3'
miRNA:   3'- cUG-GGACCCG-UCCGCCaGCGGuGGGU- -5'
3912 5' -64.6 NC_001650.1 + 25820 0.69 0.396128
Target:  5'- gGACCCUGGGagGGGCGGcccagaggggagaggUaccCGCCACCg- -3'
miRNA:   3'- -CUGGGACCCg-UCCGCC---------------A---GCGGUGGgu -5'
3912 5' -64.6 NC_001650.1 + 21812 0.69 0.400925
Target:  5'- aGGCCCcGGGgAGGgGGaggCGaCCACCCc -3'
miRNA:   3'- -CUGGGaCCCgUCCgCCa--GC-GGUGGGu -5'
3912 5' -64.6 NC_001650.1 + 107470 0.69 0.409
Target:  5'- gGACUCUGcGguGGCcaUCGCCACCCu -3'
miRNA:   3'- -CUGGGACcCguCCGccAGCGGUGGGu -5'
3912 5' -64.6 NC_001650.1 + 90271 0.69 0.409
Target:  5'- aGAgCCUGGcGUcggccucGGCGGUcgCGCCACCCu -3'
miRNA:   3'- -CUgGGACC-CGu------CCGCCA--GCGGUGGGu -5'
3912 5' -64.6 NC_001650.1 + 156328 0.69 0.409
Target:  5'- gGGCCUcgacgggGGGCAGGgGGU-GCCucaGCCCAg -3'
miRNA:   3'- -CUGGGa------CCCGUCCgCCAgCGG---UGGGU- -5'
3912 5' -64.6 NC_001650.1 + 47815 0.69 0.409
Target:  5'- cACCCUgcGGGCAGacagGGcCGCCGCCCu -3'
miRNA:   3'- cUGGGA--CCCGUCcg--CCaGCGGUGGGu -5'
3912 5' -64.6 NC_001650.1 + 134322 0.69 0.409
Target:  5'- cGGCCa-GGGCGGccaGGUCGCCACgCCu -3'
miRNA:   3'- -CUGGgaCCCGUCcg-CCAGCGGUG-GGu -5'
3912 5' -64.6 NC_001650.1 + 59267 0.68 0.417176
Target:  5'- -gUCCUGGGCAGGaaGGU-GCCcCCCGa -3'
miRNA:   3'- cuGGGACCCGUCCg-CCAgCGGuGGGU- -5'
3912 5' -64.6 NC_001650.1 + 52117 0.68 0.417176
Target:  5'- cGGCCCguagGGGUAGGgGGUCcccgGCUcCCCu -3'
miRNA:   3'- -CUGGGa---CCCGUCCgCCAG----CGGuGGGu -5'
3912 5' -64.6 NC_001650.1 + 26912 0.68 0.417176
Target:  5'- gGACgaCCUGGGCgagggcggGGGCGGggaggUGCC-CCCAg -3'
miRNA:   3'- -CUG--GGACCCG--------UCCGCCa----GCGGuGGGU- -5'
3912 5' -64.6 NC_001650.1 + 111189 0.68 0.425452
Target:  5'- aGGCCCagGcGGCucAGGCGGcccgCGCC-CCCAg -3'
miRNA:   3'- -CUGGGa-C-CCG--UCCGCCa---GCGGuGGGU- -5'
3912 5' -64.6 NC_001650.1 + 160214 0.68 0.425452
Target:  5'- uGGCCCUcaGGuGCAGGaCGGcgcgCGCCagcuuGCCCAg -3'
miRNA:   3'- -CUGGGA--CC-CGUCC-GCCa---GCGG-----UGGGU- -5'
3912 5' -64.6 NC_001650.1 + 62584 0.68 0.432142
Target:  5'- gGGgCCUGGGCAGGaagauccugaGGUaggaguggacggGCCACCCGa -3'
miRNA:   3'- -CUgGGACCCGUCCg---------CCAg-----------CGGUGGGU- -5'
3912 5' -64.6 NC_001650.1 + 132708 0.68 0.433824
Target:  5'- uGGCCCUGaaGCAGGUGuUCGCCGagucCCCGg -3'
miRNA:   3'- -CUGGGACc-CGUCCGCcAGCGGU----GGGU- -5'
3912 5' -64.6 NC_001650.1 + 58654 0.68 0.442291
Target:  5'- -----gGGGCAGGUGGUgGuCCGCCCu -3'
miRNA:   3'- cugggaCCCGUCCGCCAgC-GGUGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.