miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3912 5' -64.6 NC_001650.1 + 72694 1.07 0.000847
Target:  5'- gGACCCUGGGCAGGCGGUCGCCACCCAc -3'
miRNA:   3'- -CUGGGACCCGUCCGCCAGCGGUGGGU- -5'
3912 5' -64.6 NC_001650.1 + 37235 0.74 0.176962
Target:  5'- aGACauaUUGGGCAGGCGGguggagugCGCC-CCCGa -3'
miRNA:   3'- -CUGg--GACCCGUCCGCCa-------GCGGuGGGU- -5'
3912 5' -64.6 NC_001650.1 + 133943 0.73 0.203739
Target:  5'- aGACCCc-GGCAGGCGGcCGCaguGCCCGc -3'
miRNA:   3'- -CUGGGacCCGUCCGCCaGCGg--UGGGU- -5'
3912 5' -64.6 NC_001650.1 + 148418 0.73 0.223489
Target:  5'- -cCCCUGGcGCGGGaCGGcCGCCGCgCAc -3'
miRNA:   3'- cuGGGACC-CGUCC-GCCaGCGGUGgGU- -5'
3912 5' -64.6 NC_001650.1 + 56649 0.73 0.228674
Target:  5'- -cCCCUGGcCcuGGGCGGUCGCCcCCCu -3'
miRNA:   3'- cuGGGACCcG--UCCGCCAGCGGuGGGu -5'
3912 5' -64.6 NC_001650.1 + 58831 0.72 0.23935
Target:  5'- cGACUCUGGcGUAGGaCGGUCGCUACa-- -3'
miRNA:   3'- -CUGGGACC-CGUCC-GCCAGCGGUGggu -5'
3912 5' -64.6 NC_001650.1 + 101871 0.72 0.250438
Target:  5'- aGCCUccgUGcaGGCGGGCGGcuUCGCCAUCCAg -3'
miRNA:   3'- cUGGG---AC--CCGUCCGCC--AGCGGUGGGU- -5'
3912 5' -64.6 NC_001650.1 + 106955 0.72 0.250438
Target:  5'- cGGCCCUGGGgGGcGCGGUCaCCACg-- -3'
miRNA:   3'- -CUGGGACCCgUC-CGCCAGcGGUGggu -5'
3912 5' -64.6 NC_001650.1 + 51298 0.72 0.252706
Target:  5'- gGACCCUcGGGCGGcuguagucucgcggaGCGGgCGCCACCg- -3'
miRNA:   3'- -CUGGGA-CCCGUC---------------CGCCaGCGGUGGgu -5'
3912 5' -64.6 NC_001650.1 + 135093 0.71 0.273883
Target:  5'- gGACCCUGGGUAGccucaGUGGcugguaucccUCGCCAUCCc -3'
miRNA:   3'- -CUGGGACCCGUC-----CGCC----------AGCGGUGGGu -5'
3912 5' -64.6 NC_001650.1 + 68174 0.71 0.280013
Target:  5'- cACCUUGGagauGguGGCGGUgGCCGCCUu -3'
miRNA:   3'- cUGGGACC----CguCCGCCAgCGGUGGGu -5'
3912 5' -64.6 NC_001650.1 + 95120 0.71 0.280013
Target:  5'- uGCCCcccGGUGGGCGGUCGUCcCCCGc -3'
miRNA:   3'- cUGGGac-CCGUCCGCCAGCGGuGGGU- -5'
3912 5' -64.6 NC_001650.1 + 31014 0.71 0.299055
Target:  5'- gGGCCUggcugGGGCGGGgGG-CGCCcuCCCAc -3'
miRNA:   3'- -CUGGGa----CCCGUCCgCCaGCGGu-GGGU- -5'
3912 5' -64.6 NC_001650.1 + 162390 0.71 0.299055
Target:  5'- gGAUCUUGGGgauggGGGUGGUCGCCuCCCc -3'
miRNA:   3'- -CUGGGACCCg----UCCGCCAGCGGuGGGu -5'
3912 5' -64.6 NC_001650.1 + 72054 0.7 0.32598
Target:  5'- uGGCCCUGGaGCAGGCccuggucaaGGUgGCUGgCCAc -3'
miRNA:   3'- -CUGGGACC-CGUCCG---------CCAgCGGUgGGU- -5'
3912 5' -64.6 NC_001650.1 + 118955 0.7 0.340103
Target:  5'- aGGCCCUGGuGUcuacGGGCGcG-CGCCuGCCCAu -3'
miRNA:   3'- -CUGGGACC-CG----UCCGC-CaGCGG-UGGGU- -5'
3912 5' -64.6 NC_001650.1 + 48119 0.7 0.340103
Target:  5'- uGACCCUgGGGCuGGacaaGGcCGCC-CCCGc -3'
miRNA:   3'- -CUGGGA-CCCGuCCg---CCaGCGGuGGGU- -5'
3912 5' -64.6 NC_001650.1 + 129436 0.7 0.347329
Target:  5'- -uCCgaGGGUGGGUGGUCGCgAgCCAc -3'
miRNA:   3'- cuGGgaCCCGUCCGCCAGCGgUgGGU- -5'
3912 5' -64.6 NC_001650.1 + 15830 0.7 0.347329
Target:  5'- aGCCUagauUGGaGCAGGuuGUgGCCACCCAc -3'
miRNA:   3'- cUGGG----ACC-CGUCCgcCAgCGGUGGGU- -5'
3912 5' -64.6 NC_001650.1 + 182537 0.7 0.347329
Target:  5'- aGCCUagauUGGaGCAGGuuGUgGCCACCCAc -3'
miRNA:   3'- cUGGG----ACC-CGUCCgcCAgCGGUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.