miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3912 5' -64.6 NC_001650.1 + 58654 0.68 0.442291
Target:  5'- -----gGGGCAGGUGGUgGuCCGCCCu -3'
miRNA:   3'- cugggaCCCGUCCGCCAgC-GGUGGGu -5'
3912 5' -64.6 NC_001650.1 + 42513 0.69 0.377317
Target:  5'- uGugUUUGGGCAGGUGG--GCCACCg- -3'
miRNA:   3'- -CugGGACCCGUCCGCCagCGGUGGgu -5'
3912 5' -64.6 NC_001650.1 + 71985 0.69 0.392951
Target:  5'- aGCaCCUGGGCgGGGCGGcCGUC-UCCAa -3'
miRNA:   3'- cUG-GGACCCG-UCCGCCaGCGGuGGGU- -5'
3912 5' -64.6 NC_001650.1 + 21812 0.69 0.400925
Target:  5'- aGGCCCcGGGgAGGgGGaggCGaCCACCCc -3'
miRNA:   3'- -CUGGGaCCCgUCCgCCa--GC-GGUGGGu -5'
3912 5' -64.6 NC_001650.1 + 156328 0.69 0.409
Target:  5'- gGGCCUcgacgggGGGCAGGgGGU-GCCucaGCCCAg -3'
miRNA:   3'- -CUGGGa------CCCGUCCgCCAgCGG---UGGGU- -5'
3912 5' -64.6 NC_001650.1 + 47815 0.69 0.409
Target:  5'- cACCCUgcGGGCAGacagGGcCGCCGCCCu -3'
miRNA:   3'- cUGGGA--CCCGUCcg--CCaGCGGUGGGu -5'
3912 5' -64.6 NC_001650.1 + 59267 0.68 0.417176
Target:  5'- -gUCCUGGGCAGGaaGGU-GCCcCCCGa -3'
miRNA:   3'- cuGGGACCCGUCCg-CCAgCGGuGGGU- -5'
3912 5' -64.6 NC_001650.1 + 111189 0.68 0.425452
Target:  5'- aGGCCCagGcGGCucAGGCGGcccgCGCC-CCCAg -3'
miRNA:   3'- -CUGGGa-C-CCG--UCCGCCa---GCGGuGGGU- -5'
3912 5' -64.6 NC_001650.1 + 132708 0.68 0.433824
Target:  5'- uGGCCCUGaaGCAGGUGuUCGCCGagucCCCGg -3'
miRNA:   3'- -CUGGGACc-CGUCCGCcAGCGGU----GGGU- -5'
3912 5' -64.6 NC_001650.1 + 182537 0.7 0.347329
Target:  5'- aGCCUagauUGGaGCAGGuuGUgGCCACCCAc -3'
miRNA:   3'- cUGGG----ACC-CGUCCgcCAgCGGUGGGU- -5'
3912 5' -64.6 NC_001650.1 + 15830 0.7 0.347329
Target:  5'- aGCCUagauUGGaGCAGGuuGUgGCCACCCAc -3'
miRNA:   3'- cUGGG----ACC-CGUCCgcCAgCGGUGGGU- -5'
3912 5' -64.6 NC_001650.1 + 118955 0.7 0.340103
Target:  5'- aGGCCCUGGuGUcuacGGGCGcG-CGCCuGCCCAu -3'
miRNA:   3'- -CUGGGACC-CG----UCCGC-CaGCGG-UGGGU- -5'
3912 5' -64.6 NC_001650.1 + 37235 0.74 0.176962
Target:  5'- aGACauaUUGGGCAGGCGGguggagugCGCC-CCCGa -3'
miRNA:   3'- -CUGg--GACCCGUCCGCCa-------GCGGuGGGU- -5'
3912 5' -64.6 NC_001650.1 + 133943 0.73 0.203739
Target:  5'- aGACCCc-GGCAGGCGGcCGCaguGCCCGc -3'
miRNA:   3'- -CUGGGacCCGUCCGCCaGCGg--UGGGU- -5'
3912 5' -64.6 NC_001650.1 + 106955 0.72 0.250438
Target:  5'- cGGCCCUGGGgGGcGCGGUCaCCACg-- -3'
miRNA:   3'- -CUGGGACCCgUC-CGCCAGcGGUGggu -5'
3912 5' -64.6 NC_001650.1 + 101871 0.72 0.250438
Target:  5'- aGCCUccgUGcaGGCGGGCGGcuUCGCCAUCCAg -3'
miRNA:   3'- cUGGG---AC--CCGUCCGCC--AGCGGUGGGU- -5'
3912 5' -64.6 NC_001650.1 + 135093 0.71 0.273883
Target:  5'- gGACCCUGGGUAGccucaGUGGcugguaucccUCGCCAUCCc -3'
miRNA:   3'- -CUGGGACCCGUC-----CGCC----------AGCGGUGGGu -5'
3912 5' -64.6 NC_001650.1 + 68174 0.71 0.280013
Target:  5'- cACCUUGGagauGguGGCGGUgGCCGCCUu -3'
miRNA:   3'- cUGGGACC----CguCCGCCAgCGGUGGGu -5'
3912 5' -64.6 NC_001650.1 + 31014 0.71 0.299055
Target:  5'- gGGCCUggcugGGGCGGGgGG-CGCCcuCCCAc -3'
miRNA:   3'- -CUGGGa----CCCGUCCgCCaGCGGu-GGGU- -5'
3912 5' -64.6 NC_001650.1 + 72054 0.7 0.32598
Target:  5'- uGGCCCUGGaGCAGGCccuggucaaGGUgGCUGgCCAc -3'
miRNA:   3'- -CUGGGACC-CGUCCG---------CCAgCGGUgGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.