miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3912 5' -64.6 NC_001650.1 + 1238 0.67 0.46736
Target:  5'- gGACCCuaaccccaaUGGGCGGGCcacaugaGGUCagugggcagGCCACCUc -3'
miRNA:   3'- -CUGGG---------ACCCGUCCG-------CCAG---------CGGUGGGu -5'
3912 5' -64.6 NC_001650.1 + 9988 0.67 0.522322
Target:  5'- gGGCCUUGGGCAauaaagcccguGGCccaauGGggGCUACCCAc -3'
miRNA:   3'- -CUGGGACCCGU-----------CCG-----CCagCGGUGGGU- -5'
3912 5' -64.6 NC_001650.1 + 15830 0.7 0.347329
Target:  5'- aGCCUagauUGGaGCAGGuuGUgGCCACCCAc -3'
miRNA:   3'- cUGGG----ACC-CGUCCgcCAgCGGUGGGU- -5'
3912 5' -64.6 NC_001650.1 + 16903 0.68 0.45085
Target:  5'- gGGCCCgGGGgaGGGCGGcagcccggccUCGCC-CCCu -3'
miRNA:   3'- -CUGGGaCCCg-UCCGCC----------AGCGGuGGGu -5'
3912 5' -64.6 NC_001650.1 + 21812 0.69 0.400925
Target:  5'- aGGCCCcGGGgAGGgGGaggCGaCCACCCc -3'
miRNA:   3'- -CUGGGaCCCgUCCgCCa--GC-GGUGGGu -5'
3912 5' -64.6 NC_001650.1 + 22038 0.66 0.550265
Target:  5'- cGGCCCUGGcccaccccaAGGCGGacgcgcUCGCCaagcuGCCCGa -3'
miRNA:   3'- -CUGGGACCcg-------UCCGCC------AGCGG-----UGGGU- -5'
3912 5' -64.6 NC_001650.1 + 22454 0.67 0.526017
Target:  5'- -cUCCUGGGCuucgugagggugauGGaCGGgagcgcggCGCCGCCCGg -3'
miRNA:   3'- cuGGGACCCGu-------------CC-GCCa-------GCGGUGGGU- -5'
3912 5' -64.6 NC_001650.1 + 25820 0.69 0.396128
Target:  5'- gGACCCUGGGagGGGCGGcccagaggggagaggUaccCGCCACCg- -3'
miRNA:   3'- -CUGGGACCCg-UCCGCC---------------A---GCGGUGGgu -5'
3912 5' -64.6 NC_001650.1 + 25953 0.66 0.531579
Target:  5'- -cCCCUGGGCauccAGGCcuccacGGcCGCCAgCCCc -3'
miRNA:   3'- cuGGGACCCG----UCCG------CCaGCGGU-GGGu -5'
3912 5' -64.6 NC_001650.1 + 26912 0.68 0.417176
Target:  5'- gGACgaCCUGGGCgagggcggGGGCGGggaggUGCC-CCCAg -3'
miRNA:   3'- -CUG--GGACCCG--------UCCGCCa----GCGGuGGGU- -5'
3912 5' -64.6 NC_001650.1 + 28025 0.68 0.4595
Target:  5'- uGGCCCUggccGGGCAGuGCGGg-GUgACCCu -3'
miRNA:   3'- -CUGGGA----CCCGUC-CGCCagCGgUGGGu -5'
3912 5' -64.6 NC_001650.1 + 31014 0.71 0.299055
Target:  5'- gGGCCUggcugGGGCGGGgGG-CGCCcuCCCAc -3'
miRNA:   3'- -CUGGGa----CCCGUCCgCCaGCGGu-GGGU- -5'
3912 5' -64.6 NC_001650.1 + 37235 0.74 0.176962
Target:  5'- aGACauaUUGGGCAGGCGGguggagugCGCC-CCCGa -3'
miRNA:   3'- -CUGg--GACCCGUCCGCCa-------GCGGuGGGU- -5'
3912 5' -64.6 NC_001650.1 + 39641 0.67 0.47706
Target:  5'- gGACCC-GGGcCAGGCGGUaGCuCugCUg -3'
miRNA:   3'- -CUGGGaCCC-GUCCGCCAgCG-GugGGu -5'
3912 5' -64.6 NC_001650.1 + 41431 0.67 0.468238
Target:  5'- uGACCCccgucUGGGCc--CGGcCGCCGCCCu -3'
miRNA:   3'- -CUGGG-----ACCCGuccGCCaGCGGUGGGu -5'
3912 5' -64.6 NC_001650.1 + 42513 0.69 0.377317
Target:  5'- uGugUUUGGGCAGGUGG--GCCACCg- -3'
miRNA:   3'- -CugGGACCCGUCCGCCagCGGUGGgu -5'
3912 5' -64.6 NC_001650.1 + 47539 0.67 0.513127
Target:  5'- -uCCCUGGGUcuauGUGG-CGCCGCCUg -3'
miRNA:   3'- cuGGGACCCGuc--CGCCaGCGGUGGGu -5'
3912 5' -64.6 NC_001650.1 + 47815 0.69 0.409
Target:  5'- cACCCUgcGGGCAGacagGGcCGCCGCCCu -3'
miRNA:   3'- cUGGGA--CCCGUCcg--CCaGCGGUGGGu -5'
3912 5' -64.6 NC_001650.1 + 48119 0.7 0.340103
Target:  5'- uGACCCUgGGGCuGGacaaGGcCGCC-CCCGc -3'
miRNA:   3'- -CUGGGA-CCCGuCCg---CCaGCGGuGGGU- -5'
3912 5' -64.6 NC_001650.1 + 49456 0.68 0.4595
Target:  5'- uGCCuCUGGGgcauCAGGgGG-CGCCGCCUc -3'
miRNA:   3'- cUGG-GACCC----GUCCgCCaGCGGUGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.