miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
392 3' -61.1 AC_000011.1 + 25694 0.66 0.342054
Target:  5'- gCCGCCgCCAGacCGUCGUcCUCGGCGg- -3'
miRNA:   3'- -GGUGGgGGUC--GCGGCGcGAGCUGUac -5'
392 3' -61.1 AC_000011.1 + 23303 0.66 0.333993
Target:  5'- gCGCUCCCGGCG--GCGCUCuGAC-UGa -3'
miRNA:   3'- gGUGGGGGUCGCggCGCGAG-CUGuAC- -5'
392 3' -61.1 AC_000011.1 + 8197 0.66 0.318292
Target:  5'- cCUGCCUCCcGCGCgG-GCUCGucaGCAUGa -3'
miRNA:   3'- -GGUGGGGGuCGCGgCgCGAGC---UGUAC- -5'
392 3' -61.1 AC_000011.1 + 21672 0.66 0.318292
Target:  5'- uUCGCUCCCAcCGCgCGCGCaUCGAgAa- -3'
miRNA:   3'- -GGUGGGGGUcGCG-GCGCG-AGCUgUac -5'
392 3' -61.1 AC_000011.1 + 23459 0.66 0.310652
Target:  5'- cCCGCCgCCCAGCcCCGCcacCUcCGACGc- -3'
miRNA:   3'- -GGUGG-GGGUCGcGGCGc--GA-GCUGUac -5'
392 3' -61.1 AC_000011.1 + 16557 0.67 0.295792
Target:  5'- gCCGaCCgCGGCGCCGCGC-CGGgGg- -3'
miRNA:   3'- -GGUgGGgGUCGCGGCGCGaGCUgUac -5'
392 3' -61.1 AC_000011.1 + 8583 0.67 0.281492
Target:  5'- -aACCUaCCGcGCGCgGCGC-CGACGUGc -3'
miRNA:   3'- ggUGGG-GGU-CGCGgCGCGaGCUGUAC- -5'
392 3' -61.1 AC_000011.1 + 26496 0.67 0.281492
Target:  5'- uCCACCCgcaugaauuggcUCAGCGCCGgGCccgCGAUg-- -3'
miRNA:   3'- -GGUGGG------------GGUCGCGGCgCGa--GCUGuac -5'
392 3' -61.1 AC_000011.1 + 14253 0.67 0.27455
Target:  5'- gCCGCCCCaccGCGa-GCGCUCGuCAa- -3'
miRNA:   3'- -GGUGGGGgu-CGCggCGCGAGCuGUac -5'
392 3' -61.1 AC_000011.1 + 9365 0.67 0.261078
Target:  5'- gUCugCCCguGCGCCGCcggCGACGc- -3'
miRNA:   3'- -GGugGGGguCGCGGCGcgaGCUGUac -5'
392 3' -61.1 AC_000011.1 + 21316 0.68 0.254546
Target:  5'- cUCGCCCCCGGUcucgcggccgGCCGUGUU-GACgAUGg -3'
miRNA:   3'- -GGUGGGGGUCG----------CGGCGCGAgCUG-UAC- -5'
392 3' -61.1 AC_000011.1 + 17776 0.68 0.248149
Target:  5'- gCCGCCuggaCCCGGUGCCGCccGC-CGGCuccGUGg -3'
miRNA:   3'- -GGUGG----GGGUCGCGGCG--CGaGCUG---UAC- -5'
392 3' -61.1 AC_000011.1 + 16863 0.68 0.235754
Target:  5'- gCACCUCCauggugcuGGUGCUGgGCUUGAuCAUGg -3'
miRNA:   3'- gGUGGGGG--------UCGCGGCgCGAGCU-GUAC- -5'
392 3' -61.1 AC_000011.1 + 16927 0.68 0.229754
Target:  5'- aUCAUCCCCA-CGCCGgGCUaccgCGGCAc- -3'
miRNA:   3'- -GGUGGGGGUcGCGGCgCGA----GCUGUac -5'
392 3' -61.1 AC_000011.1 + 9888 0.68 0.223884
Target:  5'- gCGCCaggUCGGCGacgaCGCGCUCGGCGa- -3'
miRNA:   3'- gGUGGg--GGUCGCg---GCGCGAGCUGUac -5'
392 3' -61.1 AC_000011.1 + 16342 0.68 0.223884
Target:  5'- uUCACgCCCGGCGa-GCGCUcCGGCAc- -3'
miRNA:   3'- -GGUGgGGGUCGCggCGCGA-GCUGUac -5'
392 3' -61.1 AC_000011.1 + 16267 0.69 0.207033
Target:  5'- uUCGcCCCCCGGCGgCGCGUgcagUGGCGc- -3'
miRNA:   3'- -GGU-GGGGGUCGCgGCGCGa---GCUGUac -5'
392 3' -61.1 AC_000011.1 + 15566 0.69 0.196417
Target:  5'- aCACCCCguGCGCgUGCGCg-GGCAc- -3'
miRNA:   3'- gGUGGGGguCGCG-GCGCGagCUGUac -5'
392 3' -61.1 AC_000011.1 + 5285 0.7 0.167382
Target:  5'- aCCGCUCCCgaucGGCGCCcuGCGCgUCGGCc-- -3'
miRNA:   3'- -GGUGGGGG----UCGCGG--CGCG-AGCUGuac -5'
392 3' -61.1 AC_000011.1 + 21446 0.71 0.158593
Target:  5'- uCCACCCagaccgugCAGgGuCCGCGCUCGGCc-- -3'
miRNA:   3'- -GGUGGGg-------GUCgC-GGCGCGAGCUGuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.