miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3962 5' -51.6 NC_001650.1 + 122931 0.66 0.996006
Target:  5'- aGCCCA-CGccCACGGGGUcCu--GGCGg -3'
miRNA:   3'- -CGGGUaGUa-GUGCCCCAaGuauCUGC- -5'
3962 5' -51.6 NC_001650.1 + 29043 0.66 0.994599
Target:  5'- cGCCC-UCGgggCGCGGGGggUGgccGACGu -3'
miRNA:   3'- -CGGGuAGUa--GUGCCCCaaGUau-CUGC- -5'
3962 5' -51.6 NC_001650.1 + 172620 0.66 0.994519
Target:  5'- uGCCCAgcaaccagggccuUCAUuggcCAUGGGGUgaGUGGGCa -3'
miRNA:   3'- -CGGGU-------------AGUA----GUGCCCCAagUAUCUGc -5'
3962 5' -51.6 NC_001650.1 + 62567 0.67 0.991762
Target:  5'- cGCCagGUCGUCcuCGGGGggCcUGGGCa -3'
miRNA:   3'- -CGGg-UAGUAGu-GCCCCaaGuAUCUGc -5'
3962 5' -51.6 NC_001650.1 + 5618 0.67 0.991762
Target:  5'- uCCCAUUgGUCACaGGGUagaGUGGGCGg -3'
miRNA:   3'- cGGGUAG-UAGUGcCCCAag-UAUCUGC- -5'
3962 5' -51.6 NC_001650.1 + 172325 0.67 0.991762
Target:  5'- uCCCAUUgGUCACaGGGUagaGUGGGCGg -3'
miRNA:   3'- cGGGUAG-UAGUGcCCCAag-UAUCUGC- -5'
3962 5' -51.6 NC_001650.1 + 127562 0.67 0.990591
Target:  5'- aGCCCAUgGcuacugCGCGGGGgggUCAgcuaggAGGCc -3'
miRNA:   3'- -CGGGUAgUa-----GUGCCCCa--AGUa-----UCUGc -5'
3962 5' -51.6 NC_001650.1 + 125897 0.67 0.990467
Target:  5'- aGgCCAUagaCGCGGGGUUCAUcaaaaacAGGCu -3'
miRNA:   3'- -CgGGUAguaGUGCCCCAAGUA-------UCUGc -5'
3962 5' -51.6 NC_001650.1 + 162511 0.67 0.989293
Target:  5'- cGCCUG-CAUCAUGGGGgcgacgUCccUGGACa -3'
miRNA:   3'- -CGGGUaGUAGUGCCCCa-----AGu-AUCUGc -5'
3962 5' -51.6 NC_001650.1 + 36329 0.67 0.989155
Target:  5'- uGUCCAagGUCAagguggcCGGGGUggugccCAUAGACa -3'
miRNA:   3'- -CGGGUagUAGU-------GCCCCAa-----GUAUCUGc -5'
3962 5' -51.6 NC_001650.1 + 170899 0.67 0.987858
Target:  5'- gGCCCuauaugGUCcuaccgGUCAUGGGGggUCAUGGGgGg -3'
miRNA:   3'- -CGGG------UAG------UAGUGCCCCa-AGUAUCUgC- -5'
3962 5' -51.6 NC_001650.1 + 101949 0.67 0.987858
Target:  5'- cGCCCAgCAgCACGGGGUgguUGGGu- -3'
miRNA:   3'- -CGGGUaGUaGUGCCCCAaguAUCUgc -5'
3962 5' -51.6 NC_001650.1 + 4192 0.67 0.987858
Target:  5'- gGCCCuauaugGUCcuaccgGUCAUGGGGggUCAUGGGgGg -3'
miRNA:   3'- -CGGG------UAG------UAGUGCCCCa-AGUAUCUgC- -5'
3962 5' -51.6 NC_001650.1 + 5913 0.67 0.986114
Target:  5'- uGCCCAgcaaccagggccuUCAUuggcCAUGGGGUUgaGUGGGCa -3'
miRNA:   3'- -CGGGU-------------AGUA----GUGCCCCAAg-UAUCUGc -5'
3962 5' -51.6 NC_001650.1 + 68065 0.68 0.984549
Target:  5'- cGCUCAggGUCAgGGGGcUCAUGaACGg -3'
miRNA:   3'- -CGGGUagUAGUgCCCCaAGUAUcUGC- -5'
3962 5' -51.6 NC_001650.1 + 92048 0.68 0.978355
Target:  5'- gGCCCAUCAUCuucaACGGGGaggu--GACc -3'
miRNA:   3'- -CGGGUAGUAG----UGCCCCaaguauCUGc -5'
3962 5' -51.6 NC_001650.1 + 175625 0.68 0.97593
Target:  5'- uGCCCAgc--CACGGGGgaguccCAUGGGCc -3'
miRNA:   3'- -CGGGUaguaGUGCCCCaa----GUAUCUGc -5'
3962 5' -51.6 NC_001650.1 + 154025 0.68 0.975165
Target:  5'- gGUCCGUCAggacccccagggccUCGCGGGuGUUC-UGGAgGa -3'
miRNA:   3'- -CGGGUAGU--------------AGUGCCC-CAAGuAUCUgC- -5'
3962 5' -51.6 NC_001650.1 + 38186 0.69 0.970494
Target:  5'- uGCUCugguUCAUCAgGGGGUcCAcGGACu -3'
miRNA:   3'- -CGGGu---AGUAGUgCCCCAaGUaUCUGc -5'
3962 5' -51.6 NC_001650.1 + 110687 0.7 0.953179
Target:  5'- cGUCCGcCGUCACGGGGgUCA-GGAUc -3'
miRNA:   3'- -CGGGUaGUAGUGCCCCaAGUaUCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.