miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
404 3' -56.1 AC_000011.1 + 15846 0.66 0.566319
Target:  5'- -----gCCA-GGCGCACGggacGCAgGGCCa -3'
miRNA:   3'- agaaggGGUaCCGCGUGU----UGUgCCGG- -5'
404 3' -56.1 AC_000011.1 + 16267 0.66 0.566319
Target:  5'- uUCgccCCCCGgcGGCGCguGCAgugGCGCGGgCg -3'
miRNA:   3'- -AGaa-GGGGUa-CCGCG--UGU---UGUGCCgG- -5'
404 3' -56.1 AC_000011.1 + 6185 0.66 0.566319
Target:  5'- uUUUUCCUUGUcGGCGCGCuccuugGCGGCg -3'
miRNA:   3'- -AGAAGGGGUA-CCGCGUGuug---UGCCGg -5'
404 3' -56.1 AC_000011.1 + 16623 0.66 0.555236
Target:  5'- gCUUgaaCCCccGGCGCGgCGcCGCGGUCg -3'
miRNA:   3'- aGAAg--GGGuaCCGCGU-GUuGUGCCGG- -5'
404 3' -56.1 AC_000011.1 + 22084 0.66 0.548617
Target:  5'- ---aCCCCGUGuaccgcaacucccgcGCGCAgAACGCGGgucCCa -3'
miRNA:   3'- agaaGGGGUAC---------------CGCGUgUUGUGCC---GG- -5'
404 3' -56.1 AC_000011.1 + 4152 0.66 0.544218
Target:  5'- --aUCaCCCAgucauagcaggGGCGCAgGGCAUGGUg -3'
miRNA:   3'- agaAG-GGGUa----------CCGCGUgUUGUGCCGg -5'
404 3' -56.1 AC_000011.1 + 8783 0.66 0.544218
Target:  5'- --gUCUCCGcggccGGCGCGCucCACGGUg -3'
miRNA:   3'- agaAGGGGUa----CCGCGUGuuGUGCCGg -5'
404 3' -56.1 AC_000011.1 + 9365 0.66 0.533273
Target:  5'- gUCUg-CCCGUGcGcCGCcgGCGACGCaGGCCc -3'
miRNA:   3'- -AGAagGGGUAC-C-GCG--UGUUGUG-CCGG- -5'
404 3' -56.1 AC_000011.1 + 7158 0.66 0.522406
Target:  5'- --cUCCCCGUGGagaagggcugcUGCGCcuACAaGGCCg -3'
miRNA:   3'- agaAGGGGUACC-----------GCGUGu-UGUgCCGG- -5'
404 3' -56.1 AC_000011.1 + 13414 0.67 0.511627
Target:  5'- ---aCCgCCGcGGCaGCACccuCGCGGCCg -3'
miRNA:   3'- agaaGG-GGUaCCG-CGUGuu-GUGCCGG- -5'
404 3' -56.1 AC_000011.1 + 22894 0.67 0.511627
Target:  5'- uUCUUCaCCAUcaucuuaGCGCuaGCAGcCGCGGCCa -3'
miRNA:   3'- -AGAAGgGGUAc------CGCG--UGUU-GUGCCGG- -5'
404 3' -56.1 AC_000011.1 + 19818 0.67 0.500941
Target:  5'- --gUCCaCCAgcgagGGCGcCACcACcCGGCCg -3'
miRNA:   3'- agaAGG-GGUa----CCGC-GUGuUGuGCCGG- -5'
404 3' -56.1 AC_000011.1 + 16927 0.67 0.500941
Target:  5'- aUCaUCCCCAcgccgGGCuacCGCGGCACGcGCUu -3'
miRNA:   3'- -AGaAGGGGUa----CCGc--GUGUUGUGC-CGG- -5'
404 3' -56.1 AC_000011.1 + 27100 0.67 0.500941
Target:  5'- ---gUCCCAUGGUgGCGCAGCugaccuagcuCGGCUu -3'
miRNA:   3'- agaaGGGGUACCG-CGUGUUGu---------GCCGG- -5'
404 3' -56.1 AC_000011.1 + 21482 0.67 0.479872
Target:  5'- aCUUUUCCAgGGUGaCGCAGCGguccucggUGGCCa -3'
miRNA:   3'- aGAAGGGGUaCCGC-GUGUUGU--------GCCGG- -5'
404 3' -56.1 AC_000011.1 + 28393 0.67 0.479872
Target:  5'- gUCUUCUCCAUcGCuuACAgccuguGCACGGCg -3'
miRNA:   3'- -AGAAGGGGUAcCGcgUGU------UGUGCCGg -5'
404 3' -56.1 AC_000011.1 + 25447 0.67 0.459246
Target:  5'- aUUUCUggAUGGCuuGCAAUugGGCCa -3'
miRNA:   3'- aGAAGGggUACCGcgUGUUGugCCGG- -5'
404 3' -56.1 AC_000011.1 + 17480 0.68 0.449111
Target:  5'- uUCgUCCC--UGGCucCGCGACACGGCa -3'
miRNA:   3'- -AGaAGGGguACCGc-GUGUUGUGCCGg -5'
404 3' -56.1 AC_000011.1 + 22168 0.68 0.439101
Target:  5'- gUCUgccUUCCCAUGGUGgGCAcGCACccgGGCUu -3'
miRNA:   3'- -AGA---AGGGGUACCGCgUGU-UGUG---CCGG- -5'
404 3' -56.1 AC_000011.1 + 7107 0.68 0.429219
Target:  5'- cCUUCUCCAcggggagGGCGUAgGccuGgGCGGCCu -3'
miRNA:   3'- aGAAGGGGUa------CCGCGUgU---UgUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.