miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4042 3' -56.5 NC_001650.1 + 2584 0.72 0.6383
Target:  5'- cGCCUACCucauaccccuaucuCCUCcccccGGCuCUCUAUUGGCc -3'
miRNA:   3'- -CGGGUGG--------------GGAGau---CCG-GAGAUAACCG- -5'
4042 3' -56.5 NC_001650.1 + 179432 0.72 0.64133
Target:  5'- gGCCUACCCCUCgagccccGGCCUggAUUuGCa -3'
miRNA:   3'- -CGGGUGGGGAGau-----CCGGAgaUAAcCG- -5'
4042 3' -56.5 NC_001650.1 + 12725 0.72 0.64133
Target:  5'- gGCCUACCCCUCgagccccGGCCUggAUUuGCa -3'
miRNA:   3'- -CGGGUGGGGAGau-----CCGGAgaUAAcCG- -5'
4042 3' -56.5 NC_001650.1 + 124041 0.72 0.645369
Target:  5'- cGCCCGCagaccccggccuccuCCCUCUuucccgGGGCCgugCUGcUGGCc -3'
miRNA:   3'- -CGGGUG---------------GGGAGA------UCCGGa--GAUaACCG- -5'
4042 3' -56.5 NC_001650.1 + 5748 0.71 0.651424
Target:  5'- uGCCUagcaACCCC----GGCCUUUAUUGGCc -3'
miRNA:   3'- -CGGG----UGGGGagauCCGGAGAUAACCG- -5'
4042 3' -56.5 NC_001650.1 + 172455 0.71 0.651424
Target:  5'- uGCCUagcaACCCC----GGCCUUUAUUGGCc -3'
miRNA:   3'- -CGGG----UGGGGagauCCGGAGAUAACCG- -5'
4042 3' -56.5 NC_001650.1 + 126778 0.71 0.651424
Target:  5'- aCCUgaACCCCUUccAGGCCUCUGggGGa -3'
miRNA:   3'- cGGG--UGGGGAGa-UCCGGAGAUaaCCg -5'
4042 3' -56.5 NC_001650.1 + 105870 0.71 0.670554
Target:  5'- aGCCC-CCCCUCUGucaggauGGCCUCccugAUcucGGCc -3'
miRNA:   3'- -CGGGuGGGGAGAU-------CCGGAGa---UAa--CCG- -5'
4042 3' -56.5 NC_001650.1 + 89137 0.71 0.681582
Target:  5'- aCCCGCCCUUCUauAGGUCcCgccUGGCg -3'
miRNA:   3'- cGGGUGGGGAGA--UCCGGaGauaACCG- -5'
4042 3' -56.5 NC_001650.1 + 55215 0.71 0.685582
Target:  5'- cGCCCGCgCCCUCgaAGGCCUgccucaccuuuucgcCgg-UGGCc -3'
miRNA:   3'- -CGGGUG-GGGAGa-UCCGGA---------------GauaACCG- -5'
4042 3' -56.5 NC_001650.1 + 56842 0.7 0.701504
Target:  5'- cGCCgggagACCCUUgCUGGGCCUacAUUGGCc -3'
miRNA:   3'- -CGGg----UGGGGA-GAUCCGGAgaUAACCG- -5'
4042 3' -56.5 NC_001650.1 + 95923 0.7 0.701504
Target:  5'- cGCCgCGCCCCUCcaGGGCCgcgauccacUCguugUGGCc -3'
miRNA:   3'- -CGG-GUGGGGAGa-UCCGG---------AGaua-ACCG- -5'
4042 3' -56.5 NC_001650.1 + 127775 0.7 0.721197
Target:  5'- gGCCCACCCCUCcaAGGCCaagaaccugCUGc-GGUu -3'
miRNA:   3'- -CGGGUGGGGAGa-UCCGGa--------GAUaaCCG- -5'
4042 3' -56.5 NC_001650.1 + 53539 0.7 0.721197
Target:  5'- aCCCACCCCUCcacggcGGCCUUgcccccGGUg -3'
miRNA:   3'- cGGGUGGGGAGau----CCGGAGauaa--CCG- -5'
4042 3' -56.5 NC_001650.1 + 56642 0.7 0.730937
Target:  5'- aGUCCACCCC-CU-GGCC-CUG--GGCg -3'
miRNA:   3'- -CGGGUGGGGaGAuCCGGaGAUaaCCG- -5'
4042 3' -56.5 NC_001650.1 + 57405 0.7 0.730937
Target:  5'- cCCCACCCC-CUGcGGCC-Cg---GGCg -3'
miRNA:   3'- cGGGUGGGGaGAU-CCGGaGauaaCCG- -5'
4042 3' -56.5 NC_001650.1 + 56189 0.7 0.740593
Target:  5'- uGCCCuccaCCUUCUGGGUCUCggc-GGUg -3'
miRNA:   3'- -CGGGug--GGGAGAUCCGGAGauaaCCG- -5'
4042 3' -56.5 NC_001650.1 + 157010 0.7 0.740593
Target:  5'- cGCCCGCCCCcCUGuGGCCggUCgc-UGGa -3'
miRNA:   3'- -CGGGUGGGGaGAU-CCGG--AGauaACCg -5'
4042 3' -56.5 NC_001650.1 + 110646 0.7 0.740593
Target:  5'- gGCCCugCCC-CUGGGg--CUGUUGGa -3'
miRNA:   3'- -CGGGugGGGaGAUCCggaGAUAACCg -5'
4042 3' -56.5 NC_001650.1 + 49636 0.7 0.740593
Target:  5'- uCUCGCCCCUCUacaaccAGGCCUggGggugGGCc -3'
miRNA:   3'- cGGGUGGGGAGA------UCCGGAgaUaa--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.