Results 1 - 20 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4042 | 3' | -56.5 | NC_001650.1 | + | 2736 | 1.13 | 0.001753 |
Target: 5'- aGCCCACCCCUCUAGGCCUCUAUUGGCc -3' miRNA: 3'- -CGGGUGGGGAGAUCCGGAGAUAACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 169443 | 1.13 | 0.001753 |
Target: 5'- aGCCCACCCCUCUAGGCCUCUAUUGGCc -3' miRNA: 3'- -CGGGUGGGGAGAUCCGGAGAUAACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 22446 | 0.8 | 0.257708 |
Target: 5'- cGCCCACCCUcCUGGGCUUCgugagGGUg -3' miRNA: 3'- -CGGGUGGGGaGAUCCGGAGauaa-CCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 2891 | 0.79 | 0.289559 |
Target: 5'- uGCCCACCCC-CUAGcCCaccCUAUUGGCc -3' miRNA: 3'- -CGGGUGGGGaGAUCcGGa--GAUAACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 169598 | 0.79 | 0.289559 |
Target: 5'- uGCCCACCCC-CUAGcCCaccCUAUUGGCc -3' miRNA: 3'- -CGGGUGGGGaGAUCcGGa--GAUAACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 54304 | 0.78 | 0.296289 |
Target: 5'- cGUCCGcCCCCUCUAuGGCCugcUCUAUcUGGCu -3' miRNA: 3'- -CGGGU-GGGGAGAU-CCGG---AGAUA-ACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 167783 | 0.77 | 0.34679 |
Target: 5'- gGCCCACCCC-C-GGGCCcCcAUUGGCu -3' miRNA: 3'- -CGGGUGGGGaGaUCCGGaGaUAACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 162412 | 0.77 | 0.34679 |
Target: 5'- cGCCUcCCCCUCcccgGGGCCUCggccGGCg -3' miRNA: 3'- -CGGGuGGGGAGa---UCCGGAGauaaCCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 1076 | 0.77 | 0.34679 |
Target: 5'- gGCCCACCCC-C-GGGCCcCcAUUGGCu -3' miRNA: 3'- -CGGGUGGGGaGaUCCGGaGaUAACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 126486 | 0.76 | 0.4203 |
Target: 5'- cGCCCACCCCgcgAGGCCg-----GGCa -3' miRNA: 3'- -CGGGUGGGGagaUCCGGagauaaCCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 29760 | 0.75 | 0.429033 |
Target: 5'- gGCCgCGCCCCaguacUCUGGGuCCUCguccgUGGCu -3' miRNA: 3'- -CGG-GUGGGG-----AGAUCC-GGAGaua--ACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 130978 | 0.75 | 0.453134 |
Target: 5'- gGCCCgucuucgaggcggcGCCCCUgUcgcGGGcCCUCUAUUGGUc -3' miRNA: 3'- -CGGG--------------UGGGGAgA---UCC-GGAGAUAACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 55904 | 0.74 | 0.499614 |
Target: 5'- cGCCCACCgCCUCcgcgaAGGCC-CUGUccuugacccccggcUGGCu -3' miRNA: 3'- -CGGGUGG-GGAGa----UCCGGaGAUA--------------ACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 134575 | 0.74 | 0.512047 |
Target: 5'- gGCCCACCCC-C-AGGCCUggUUGUagaggGGCg -3' miRNA: 3'- -CGGGUGGGGaGaUCCGGA--GAUAa----CCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 167968 | 0.74 | 0.521698 |
Target: 5'- uCCCGCCCC-CcGGGCCcCcAUUGGCu -3' miRNA: 3'- cGGGUGGGGaGaUCCGGaGaUAACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 1261 | 0.74 | 0.521698 |
Target: 5'- uCCCGCCCC-CcGGGCCcCcAUUGGCu -3' miRNA: 3'- cGGGUGGGGaGaUCCGGaGaUAACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 51765 | 0.72 | 0.598948 |
Target: 5'- cGCCCGCCCCUCUu--CCUCUcccccagccaGGCg -3' miRNA: 3'- -CGGGUGGGGAGAuccGGAGAuaa-------CCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 169770 | 0.72 | 0.600961 |
Target: 5'- cGCCgGgCCCgg-AGGCCUCccAUUGGCu -3' miRNA: 3'- -CGGgUgGGGagaUCCGGAGa-UAACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 3063 | 0.72 | 0.600961 |
Target: 5'- cGCCgGgCCCgg-AGGCCUCccAUUGGCu -3' miRNA: 3'- -CGGgUgGGGagaUCCGGAGa-UAACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 169291 | 0.72 | 0.6383 |
Target: 5'- cGCCUACCucauaccccuaucuCCUCcccccGGCuCUCUAUUGGCc -3' miRNA: 3'- -CGGGUGG--------------GGAGau---CCG-GAGAUAACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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