Results 1 - 20 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4042 | 3' | -56.5 | NC_001650.1 | + | 619 | 0.66 | 0.915313 |
Target: 5'- cGCCCuCCCC-C-GGGCCcCcAUUGGUc -3' miRNA: 3'- -CGGGuGGGGaGaUCCGGaGaUAACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 1076 | 0.77 | 0.34679 |
Target: 5'- gGCCCACCCC-C-GGGCCcCcAUUGGCu -3' miRNA: 3'- -CGGGUGGGGaGaUCCGGaGaUAACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 1261 | 0.74 | 0.521698 |
Target: 5'- uCCCGCCCC-CcGGGCCcCcAUUGGCu -3' miRNA: 3'- cGGGUGGGGaGaUCCGGaGaUAACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 2011 | 0.66 | 0.92633 |
Target: 5'- gGCCCACCCuCUCcccauuGGCCa-UGgaGGCc -3' miRNA: 3'- -CGGGUGGG-GAGau----CCGGagAUaaCCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 2584 | 0.72 | 0.6383 |
Target: 5'- cGCCUACCucauaccccuaucuCCUCcccccGGCuCUCUAUUGGCc -3' miRNA: 3'- -CGGGUGG--------------GGAGau---CCG-GAGAUAACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 2736 | 1.13 | 0.001753 |
Target: 5'- aGCCCACCCCUCUAGGCCUCUAUUGGCc -3' miRNA: 3'- -CGGGUGGGGAGAUCCGGAGAUAACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 2891 | 0.79 | 0.289559 |
Target: 5'- uGCCCACCCC-CUAGcCCaccCUAUUGGCc -3' miRNA: 3'- -CGGGUGGGGaGAUCcGGa--GAUAACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 3063 | 0.72 | 0.600961 |
Target: 5'- cGCCgGgCCCgg-AGGCCUCccAUUGGCu -3' miRNA: 3'- -CGGgUgGGGagaUCCGGAGa-UAACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 4083 | 0.67 | 0.87678 |
Target: 5'- gGCCCugCCaggcaUGGGgUUCUcAUUGGCu -3' miRNA: 3'- -CGGGugGGgag--AUCCgGAGA-UAACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 5748 | 0.71 | 0.651424 |
Target: 5'- uGCCUagcaACCCC----GGCCUUUAUUGGCc -3' miRNA: 3'- -CGGG----UGGGGagauCCGGAGAUAACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 5831 | 0.67 | 0.890517 |
Target: 5'- gGCagGCCCC-CUAGGCCcCcAUUGGg -3' miRNA: 3'- -CGggUGGGGaGAUCCGGaGaUAACCg -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 5898 | 0.68 | 0.828157 |
Target: 5'- aGUCC-CCCCUCagUcugcccagcaaccaGGGCCUUcAUUGGCc -3' miRNA: 3'- -CGGGuGGGGAG--A--------------UCCGGAGaUAACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 6897 | 0.67 | 0.890517 |
Target: 5'- aGUCUGCCCagcaaccaGGGUCUUUAUUGGCc -3' miRNA: 3'- -CGGGUGGGgaga----UCCGGAGAUAACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 7234 | 0.69 | 0.796284 |
Target: 5'- uGCCCAgCaaCCg--GGGUCUUUAUUGGCc -3' miRNA: 3'- -CGGGUgG--GGagaUCCGGAGAUAACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 12725 | 0.72 | 0.64133 |
Target: 5'- gGCCUACCCCUCgagccccGGCCUggAUUuGCa -3' miRNA: 3'- -CGGGUGGGGAGau-----CCGGAgaUAAcCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 13084 | 0.67 | 0.87678 |
Target: 5'- gGCCCGgCCCUCUGcGGUCgaggccGGCc -3' miRNA: 3'- -CGGGUgGGGAGAU-CCGGagauaaCCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 13436 | 0.69 | 0.805111 |
Target: 5'- cCCCAUgCCUggCaGGGCCUCUccauauUUGGCa -3' miRNA: 3'- cGGGUGgGGA--GaUCCGGAGAu-----AACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 14760 | 0.67 | 0.883757 |
Target: 5'- cCCCaugACCCCUCU-GGCCaaUAgaGGCc -3' miRNA: 3'- cGGG---UGGGGAGAuCCGGagAUaaCCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 16179 | 0.69 | 0.766179 |
Target: 5'- gGCCCACCCaCUuaaacaguagggggCUAGGCCaUUAagaUGGCc -3' miRNA: 3'- -CGGGUGGG-GA--------------GAUCCGGaGAUa--ACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 17448 | 0.68 | 0.830642 |
Target: 5'- uCCCggGCCCCUCUccucGGCCgccCUuugUGGCc -3' miRNA: 3'- cGGG--UGGGGAGAu---CCGGa--GAua-ACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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