miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4042 3' -56.5 NC_001650.1 + 47343 0.66 0.92633
Target:  5'- aGCCCgggucGCCCCgcccgAGcGCCUCUcgcGGCu -3'
miRNA:   3'- -CGGG-----UGGGGaga--UC-CGGAGAuaaCCG- -5'
4042 3' -56.5 NC_001650.1 + 167326 0.66 0.915313
Target:  5'- cGCCCuCCCC-C-GGGCCcCcAUUGGUc -3'
miRNA:   3'- -CGGGuGGGGaGaUCCGGaGaUAACCG- -5'
4042 3' -56.5 NC_001650.1 + 131799 0.66 0.915313
Target:  5'- uGCCUcCCCC-CaGGGCCUucCUGUUcaGGCc -3'
miRNA:   3'- -CGGGuGGGGaGaUCCGGA--GAUAA--CCG- -5'
4042 3' -56.5 NC_001650.1 + 619 0.66 0.915313
Target:  5'- cGCCCuCCCC-C-GGGCCcCcAUUGGUc -3'
miRNA:   3'- -CGGGuGGGGaGaUCCGGaGaUAACCG- -5'
4042 3' -56.5 NC_001650.1 + 130439 0.66 0.915313
Target:  5'- aGUCCgACCCCUaCUcGGCCacgcgcgagagUCUGgucUGGCu -3'
miRNA:   3'- -CGGG-UGGGGA-GAuCCGG-----------AGAUa--ACCG- -5'
4042 3' -56.5 NC_001650.1 + 125202 0.66 0.925801
Target:  5'- uCCCGCCCCggaggCgacgGGGCCccggcuuucaaucUCUGgcacGGCg -3'
miRNA:   3'- cGGGUGGGGa----Ga---UCCGG-------------AGAUaa--CCG- -5'
4042 3' -56.5 NC_001650.1 + 45964 0.66 0.920938
Target:  5'- gGCCaguuCCCCUCUcaGCCgcgCgccgAUUGGCc -3'
miRNA:   3'- -CGGgu--GGGGAGAucCGGa--Ga---UAACCG- -5'
4042 3' -56.5 NC_001650.1 + 61990 0.66 0.897056
Target:  5'- cCUCGCCCCc---GGCCUCg---GGCa -3'
miRNA:   3'- cGGGUGGGGagauCCGGAGauaaCCG- -5'
4042 3' -56.5 NC_001650.1 + 2011 0.66 0.92633
Target:  5'- gGCCCACCCuCUCcccauuGGCCa-UGgaGGCc -3'
miRNA:   3'- -CGGGUGGG-GAGau----CCGGagAUaaCCG- -5'
4042 3' -56.5 NC_001650.1 + 160643 0.66 0.920938
Target:  5'- aGCCCACCCCguuggagaAGGCUccaUCa--UGGCc -3'
miRNA:   3'- -CGGGUGGGGaga-----UCCGG---AGauaACCG- -5'
4042 3' -56.5 NC_001650.1 + 26753 0.66 0.915313
Target:  5'- uGUgCGCCgCCUCcAGGCagCUCU-UUGGCu -3'
miRNA:   3'- -CGgGUGG-GGAGaUCCG--GAGAuAACCG- -5'
4042 3' -56.5 NC_001650.1 + 148000 0.66 0.909456
Target:  5'- cGCCCGCCCC-CUgagGGGUCcCg--UGGg -3'
miRNA:   3'- -CGGGUGGGGaGA---UCCGGaGauaACCg -5'
4042 3' -56.5 NC_001650.1 + 74373 0.66 0.920938
Target:  5'- uCCUACCUCUCcgAGGCCaccc-UGGCc -3'
miRNA:   3'- cGGGUGGGGAGa-UCCGGagauaACCG- -5'
4042 3' -56.5 NC_001650.1 + 54906 0.66 0.897056
Target:  5'- aGCCC-CCggCUCgcGGCCUCgcucgGGCg -3'
miRNA:   3'- -CGGGuGGg-GAGauCCGGAGauaa-CCG- -5'
4042 3' -56.5 NC_001650.1 + 132110 0.66 0.895766
Target:  5'- cCCUACCCCUacGGGCCgcccaccGGCa -3'
miRNA:   3'- cGGGUGGGGAgaUCCGGagauaa-CCG- -5'
4042 3' -56.5 NC_001650.1 + 52838 0.66 0.908858
Target:  5'- cGCCCugCCCgccCUGGGagcgggcgcgccuCCUCUcgUaGCa -3'
miRNA:   3'- -CGGGugGGGa--GAUCC-------------GGAGAuaAcCG- -5'
4042 3' -56.5 NC_001650.1 + 111320 0.66 0.908257
Target:  5'- uGCCCACCCUUUccccuggAGGCC-CUGcccauccugagGGCc -3'
miRNA:   3'- -CGGGUGGGGAGa------UCCGGaGAUaa---------CCG- -5'
4042 3' -56.5 NC_001650.1 + 168718 0.66 0.92633
Target:  5'- gGCCCACCCuCUCcccauuGGCCa-UGgaGGCc -3'
miRNA:   3'- -CGGGUGGG-GAGau----CCGGagAUaaCCG- -5'
4042 3' -56.5 NC_001650.1 + 156126 0.66 0.90337
Target:  5'- aGCaCCGCCCCgg-GGGUCUCUGa---- -3'
miRNA:   3'- -CG-GGUGGGGagaUCCGGAGAUaaccg -5'
4042 3' -56.5 NC_001650.1 + 135850 0.66 0.902748
Target:  5'- cCCCGUCCCUCaGGGCCUUgagaaagcucaggUcgUGGUc -3'
miRNA:   3'- cGGGUGGGGAGaUCCGGAG-------------AuaACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.