miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
405 5' -52 AC_000011.1 + 13093 0.66 0.81774
Target:  5'- gCGGucauGUCGAGCGCGgCGcUGGgGGUg -3'
miRNA:   3'- aGCUu---UAGUUCGCGUgGCaGCUgCCG- -5'
405 5' -52 AC_000011.1 + 4676 0.66 0.81774
Target:  5'- cCGGGAUCGAGgGUACCuuuGUCccccagucCGGCa -3'
miRNA:   3'- aGCUUUAGUUCgCGUGG---CAGcu------GCCG- -5'
405 5' -52 AC_000011.1 + 22623 0.66 0.81774
Target:  5'- ------aCGGGUGCACCGaggcCGAgGGCa -3'
miRNA:   3'- agcuuuaGUUCGCGUGGCa---GCUgCCG- -5'
405 5' -52 AC_000011.1 + 5457 0.66 0.797971
Target:  5'- cUCGggGgcgUAGGCGUccgcGCCG-CaGugGGCg -3'
miRNA:   3'- -AGCuuUa--GUUCGCG----UGGCaG-CugCCG- -5'
405 5' -52 AC_000011.1 + 8462 0.66 0.787798
Target:  5'- gCGAGGac--GCGCGCCG--GGCGGCa -3'
miRNA:   3'- aGCUUUaguuCGCGUGGCagCUGCCG- -5'
405 5' -52 AC_000011.1 + 9392 0.66 0.776405
Target:  5'- gCGAGAccaUCGAGCGCuucaucgACCGUcugcccgugcgcCGcCGGCg -3'
miRNA:   3'- aGCUUU---AGUUCGCG-------UGGCA------------GCuGCCG- -5'
405 5' -52 AC_000011.1 + 10593 0.67 0.766936
Target:  5'- aUGAGAcuagUAAGCGCggaaagcggccgACCG-CGAUGGCu -3'
miRNA:   3'- aGCUUUa---GUUCGCG------------UGGCaGCUGCCG- -5'
405 5' -52 AC_000011.1 + 4857 0.67 0.766936
Target:  5'- aUCGggGUCAucuacGGCccCACCGgCuGCGGCa -3'
miRNA:   3'- -AGCuuUAGU-----UCGc-GUGGCaGcUGCCG- -5'
405 5' -52 AC_000011.1 + 10984 0.67 0.756273
Target:  5'- gCGAGGggcuGGCGCGCCugggggcgucGUCGccggaGCGGCa -3'
miRNA:   3'- aGCUUUagu-UCGCGUGG----------CAGC-----UGCCG- -5'
405 5' -52 AC_000011.1 + 34753 0.67 0.734546
Target:  5'- cCGAGcguucCAAGCGCcgagACCGcCGcCGGCg -3'
miRNA:   3'- aGCUUua---GUUCGCG----UGGCaGCuGCCG- -5'
405 5' -52 AC_000011.1 + 12808 0.67 0.723508
Target:  5'- aUCGGc--CAGGCGCA-CGUgGACGaGCa -3'
miRNA:   3'- -AGCUuuaGUUCGCGUgGCAgCUGC-CG- -5'
405 5' -52 AC_000011.1 + 17133 0.67 0.723508
Target:  5'- gCGGcagGGUCAGagguGCGCgGCCG-CGGCGGUa -3'
miRNA:   3'- aGCU---UUAGUU----CGCG-UGGCaGCUGCCG- -5'
405 5' -52 AC_000011.1 + 13271 0.68 0.701148
Target:  5'- aUUGggGUCGGGCaugucguacucGC-CCGUguagaacccCGGCGGCg -3'
miRNA:   3'- -AGCuuUAGUUCG-----------CGuGGCA---------GCUGCCG- -5'
405 5' -52 AC_000011.1 + 15769 0.68 0.701148
Target:  5'- -aGAGccggCGgcGGCGCAUCGccCGGCGGCa -3'
miRNA:   3'- agCUUua--GU--UCGCGUGGCa-GCUGCCG- -5'
405 5' -52 AC_000011.1 + 27759 0.68 0.678496
Target:  5'- uUCGGGAUCAGGUGgAagGUgUGAUGGCa -3'
miRNA:   3'- -AGCUUUAGUUCGCgUggCA-GCUGCCG- -5'
405 5' -52 AC_000011.1 + 11473 0.68 0.678496
Target:  5'- -aGGAA-CAGcUGCGCCGUCaGCGGCu -3'
miRNA:   3'- agCUUUaGUUcGCGUGGCAGcUGCCG- -5'
405 5' -52 AC_000011.1 + 20540 0.69 0.655653
Target:  5'- aCGu--UguAGCccuCGCCGUCGACGGUg -3'
miRNA:   3'- aGCuuuAguUCGc--GUGGCAGCUGCCG- -5'
405 5' -52 AC_000011.1 + 12742 0.69 0.655653
Target:  5'- uUCGgcGUCAgcaGGCucgaCACCGUCGcGCGGUc -3'
miRNA:   3'- -AGCuuUAGU---UCGc---GUGGCAGC-UGCCG- -5'
405 5' -52 AC_000011.1 + 8970 0.69 0.621239
Target:  5'- cUCGcccagguGGUCAuGCGCGCCGgcgauccCGAgGGCg -3'
miRNA:   3'- -AGCu------UUAGUuCGCGUGGCa------GCUgCCG- -5'
405 5' -52 AC_000011.1 + 8240 0.69 0.621239
Target:  5'- gCGGAGUCAggucAGUGgGCag-CGGCGGCg -3'
miRNA:   3'- aGCUUUAGU----UCGCgUGgcaGCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.