Results 1 - 20 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4057 | 3' | -56.2 | NC_001650.1 | + | 107166 | 0.66 | 0.925518 |
Target: 5'- uGugCCGCGUGGAcacgggcuccCCCgagGCCCAg--- -3' miRNA: 3'- -CugGGUGUACCU----------GGGaa-CGGGUguac -5' |
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4057 | 3' | -56.2 | NC_001650.1 | + | 74725 | 0.66 | 0.925518 |
Target: 5'- uGCaCCACAUGGGCagg-GCCUACAc- -3' miRNA: 3'- cUG-GGUGUACCUGggaaCGGGUGUac -5' |
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4057 | 3' | -56.2 | NC_001650.1 | + | 103730 | 0.66 | 0.925518 |
Target: 5'- uGCCCACGgaGGugaacuCCC-UGCCCGCGa- -3' miRNA: 3'- cUGGGUGUa-CCu-----GGGaACGGGUGUac -5' |
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4057 | 3' | -56.2 | NC_001650.1 | + | 134236 | 0.66 | 0.925518 |
Target: 5'- gGGCUCGCA-GGugCCggUGuCCCAgGUGa -3' miRNA: 3'- -CUGGGUGUaCCugGGa-AC-GGGUgUAC- -5' |
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4057 | 3' | -56.2 | NC_001650.1 | + | 65745 | 0.66 | 0.925518 |
Target: 5'- uGACCUACGUGGugUCcaccgcGCCCAUc-- -3' miRNA: 3'- -CUGGGUGUACCugGGaa----CGGGUGuac -5' |
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4057 | 3' | -56.2 | NC_001650.1 | + | 2340 | 0.66 | 0.920038 |
Target: 5'- --gCCACAUGGggauACCC--GCCCACuAUGg -3' miRNA: 3'- cugGGUGUACC----UGGGaaCGGGUG-UAC- -5' |
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4057 | 3' | -56.2 | NC_001650.1 | + | 169047 | 0.66 | 0.920038 |
Target: 5'- --gCCACAUGGggauACCC--GCCCACuAUGg -3' miRNA: 3'- cugGGUGUACC----UGGGaaCGGGUG-UAC- -5' |
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4057 | 3' | -56.2 | NC_001650.1 | + | 146464 | 0.66 | 0.914322 |
Target: 5'- aGACCCGCGgcccuagGcGGCCCggGCgCCGCGa- -3' miRNA: 3'- -CUGGGUGUa------C-CUGGGaaCG-GGUGUac -5' |
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4057 | 3' | -56.2 | NC_001650.1 | + | 47567 | 0.66 | 0.914322 |
Target: 5'- cGGCUCGCcUGGcACUC-UGCCCGCGg- -3' miRNA: 3'- -CUGGGUGuACC-UGGGaACGGGUGUac -5' |
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4057 | 3' | -56.2 | NC_001650.1 | + | 84789 | 0.66 | 0.90837 |
Target: 5'- gGGCCCACGcgGuGGCCaagcUGCCCGCcAUGc -3' miRNA: 3'- -CUGGGUGUa-C-CUGGga--ACGGGUG-UAC- -5' |
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4057 | 3' | -56.2 | NC_001650.1 | + | 90079 | 0.66 | 0.90837 |
Target: 5'- uGACCUugGUGGACuCCUcGCCUGucucUAUGu -3' miRNA: 3'- -CUGGGugUACCUG-GGAaCGGGU----GUAC- -5' |
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4057 | 3' | -56.2 | NC_001650.1 | + | 95344 | 0.66 | 0.902184 |
Target: 5'- -uUCCAgGcGGACUCgggguugGCCCACAUGa -3' miRNA: 3'- cuGGGUgUaCCUGGGaa-----CGGGUGUAC- -5' |
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4057 | 3' | -56.2 | NC_001650.1 | + | 131931 | 0.66 | 0.902184 |
Target: 5'- -uCCUGCuGUGGGCCCU-GCUCACGg- -3' miRNA: 3'- cuGGGUG-UACCUGGGAaCGGGUGUac -5' |
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4057 | 3' | -56.2 | NC_001650.1 | + | 117643 | 0.66 | 0.902184 |
Target: 5'- cGGCCUGCAU-GACCCUgacCCCggGCGUGg -3' miRNA: 3'- -CUGGGUGUAcCUGGGAac-GGG--UGUAC- -5' |
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4057 | 3' | -56.2 | NC_001650.1 | + | 58096 | 0.66 | 0.895767 |
Target: 5'- cGCCCGCcgGGGCCUggG-CCGCGa- -3' miRNA: 3'- cUGGGUGuaCCUGGGaaCgGGUGUac -5' |
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4057 | 3' | -56.2 | NC_001650.1 | + | 159259 | 0.67 | 0.889121 |
Target: 5'- -cCCCAgGUGGguGCCCUggGCCCAgCAg- -3' miRNA: 3'- cuGGGUgUACC--UGGGAa-CGGGU-GUac -5' |
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4057 | 3' | -56.2 | NC_001650.1 | + | 2404 | 0.67 | 0.882252 |
Target: 5'- cGGCCCAgcUGGcACCC-UGCCCGgGUc -3' miRNA: 3'- -CUGGGUguACC-UGGGaACGGGUgUAc -5' |
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4057 | 3' | -56.2 | NC_001650.1 | + | 169111 | 0.67 | 0.882252 |
Target: 5'- cGGCCCAgcUGGcACCC-UGCCCGgGUc -3' miRNA: 3'- -CUGGGUguACC-UGGGaACGGGUgUAc -5' |
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4057 | 3' | -56.2 | NC_001650.1 | + | 24592 | 0.67 | 0.881552 |
Target: 5'- cAUCCAagggaauCAUGGGuccCCCUUGCCCACc-- -3' miRNA: 3'- cUGGGU-------GUACCU---GGGAACGGGUGuac -5' |
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4057 | 3' | -56.2 | NC_001650.1 | + | 93127 | 0.67 | 0.881552 |
Target: 5'- aGGCCCAgCAUGGACCCccuuaaGCUCuuuacggGCGUGc -3' miRNA: 3'- -CUGGGU-GUACCUGGGaa----CGGG-------UGUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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