miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
409 3' -57.5 AC_000011.1 + 18036 0.67 0.409482
Target:  5'- cCCGCCCCucuacaGUGGcUAAGc-CCCUGCCg -3'
miRNA:   3'- uGGCGGGG------UACCuGUUCuuGGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 17997 0.67 0.409482
Target:  5'- gGCCGCgUgGUGGGCA--GACCCaguuuCACCg -3'
miRNA:   3'- -UGGCGgGgUACCUGUucUUGGG-----GUGG- -5'
409 3' -57.5 AC_000011.1 + 17836 0.78 0.076998
Target:  5'- uGCCuCCCC-UGGACAAGcggggcgagaagcGACCCCGCCc -3'
miRNA:   3'- -UGGcGGGGuACCUGUUC-------------UUGGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 17301 0.68 0.385422
Target:  5'- cGCCGCCgCCgGUGGugGuGGcgacgcaucccguuCCCCGCCa -3'
miRNA:   3'- -UGGCGG-GG-UACCugUuCUu-------------GGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 16568 0.74 0.141348
Target:  5'- cGCCGCgCCGgggguucaagcgcgaGGGCGAGGaucuguACCCCACCa -3'
miRNA:   3'- -UGGCGgGGUa--------------CCUGUUCU------UGGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 16153 0.71 0.249652
Target:  5'- uACgGCCCUgcgGUGGugAAGGaggaaagaaaGCCCCGCa -3'
miRNA:   3'- -UGgCGGGG---UACCugUUCU----------UGGGGUGg -5'
409 3' -57.5 AC_000011.1 + 15982 0.7 0.256258
Target:  5'- uGCCGCCgCCGUGGccgcGCGucuccGggUCCUGCCg -3'
miRNA:   3'- -UGGCGG-GGUACC----UGUu----CuuGGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 15785 0.68 0.381804
Target:  5'- cAUCGCCCgGcGGcACcGGAGcacCCCCGCCa -3'
miRNA:   3'- -UGGCGGGgUaCC-UGuUCUU---GGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 14638 0.68 0.381804
Target:  5'- aGCCGCCUCAgcaaccugcUGGGCAuucgcaAGAggcaGCCCUuCCa -3'
miRNA:   3'- -UGGCGGGGU---------ACCUGU------UCU----UGGGGuGG- -5'
409 3' -57.5 AC_000011.1 + 12859 0.67 0.400118
Target:  5'- aGCCGCgCCC-UGGGcCAGGAcgACCCgggcaACCu -3'
miRNA:   3'- -UGGCG-GGGuACCU-GUUCU--UGGGg----UGG- -5'
409 3' -57.5 AC_000011.1 + 12475 0.66 0.478646
Target:  5'- -gUGCCCCG-GGGCcagGAGGACUaCACCa -3'
miRNA:   3'- ugGCGGGGUaCCUG---UUCUUGGgGUGG- -5'
409 3' -57.5 AC_000011.1 + 11898 0.66 0.447271
Target:  5'- aGCCGCCgggCCuUGGAgGcggcggcAGGACCCUACg -3'
miRNA:   3'- -UGGCGG---GGuACCUgU-------UCUUGGGGUGg -5'
409 3' -57.5 AC_000011.1 + 11358 0.66 0.477617
Target:  5'- gGCCugauGCaCCUGUGGGaccugcuggaggcCAucgugcAGAACCCCACCa -3'
miRNA:   3'- -UGG----CG-GGGUACCU-------------GU------UCUUGGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 11184 0.68 0.355401
Target:  5'- cCCGCCCCgcGUGGAaccGGGCCgCGCg -3'
miRNA:   3'- uGGCGGGG--UACCUguuCUUGGgGUGg -5'
409 3' -57.5 AC_000011.1 + 10724 0.69 0.330311
Target:  5'- gGCUGCCCCGUcGuuucCAAGA-CCCCAUa -3'
miRNA:   3'- -UGGCGGGGUAcCu---GUUCUuGGGGUGg -5'
409 3' -57.5 AC_000011.1 + 10401 0.69 0.30655
Target:  5'- cGCgCGCCUCAcGGGCcAGaccGugCCCACCa -3'
miRNA:   3'- -UG-GCGGGGUaCCUGuUC---UugGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 10259 0.71 0.249652
Target:  5'- cACCGCaCCAUGcuCGAGGACCUCGCg -3'
miRNA:   3'- -UGGCGgGGUACcuGUUCUUGGGGUGg -5'
409 3' -57.5 AC_000011.1 + 9809 0.71 0.243187
Target:  5'- aGCCGCUCCAcGGGCAccuccuCCUCGCCc -3'
miRNA:   3'- -UGGCGGGGUaCCUGUucuu--GGGGUGG- -5'
409 3' -57.5 AC_000011.1 + 9446 0.69 0.322242
Target:  5'- uGCgGCCCCGcgaGGACGGGcgcGCCgUCACCg -3'
miRNA:   3'- -UGgCGGGGUa--CCUGUUCu--UGG-GGUGG- -5'
409 3' -57.5 AC_000011.1 + 8553 0.7 0.276937
Target:  5'- uGCCGCCCCugccuccGGGCcccGAGccGCCCCuGCCg -3'
miRNA:   3'- -UGGCGGGGua-----CCUG---UUCu-UGGGG-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.